Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.acetate-malate shunt.peroxisomal acetyl-CoA synthetase (ACN/BZU)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr9 1 CH_camsi_897 2 4 0.000825322
Citrus clementina scaffold_9 1 CH_ccl_128 3 4 0.0000000403746
Gossypium hirsutum A02 1 CH_ghi_234 3 3 0.0000000898358
Gossypium raimondii Chr05 1 CH_gra_342 2 2 0.000321664
Manihot esculenta Chromosome15 1 CH_mes_282 2 2 0.0000610631
Oryza sativa ssp. japonica chr03 1 CH_osa_253 2 4 0.000158433
Petunia axillaris Peaxi162Scf00017 1 CH_pax_156 3 12 0.0000163224
Tarenaya hassleriana NW_010966178.1 1 CH_tha_134 2 2 0.000209541
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_311 2 2 0.000278772
Camellia sinensis var. sinensis Chr9 2 CH_camsi_897 2 4 0.000825322
Citrus clementina scaffold_9 2 CH_ccl_128 3 4 0.0000000403746
Eucalyptus grandis Chr01 2 CH_egr_448 3 6 0.000000102758
Gossypium hirsutum A02 2 CH_ghi_234 3 3 0.0000000898358
Gossypium hirsutum D02 2 CH_ghi_886 2 2 0.000961256
Gossypium raimondii Chr05 2 CH_gra_342 2 2 0.000321664
Manihot esculenta Chromosome15 2 CH_mes_282 2 2 0.0000610631
Oryza sativa ssp. japonica chr03 2 CH_osa_253 2 4 0.000158433
Petunia axillaris Peaxi162Scf00017 2 CH_pax_156 3 12 0.0000163224
Tarenaya hassleriana NW_010966178.1 2 CH_tha_134 2 2 0.000209541
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_311 2 2 0.000278772

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001