Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.isocitrate lyase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00004 1 CH_atr_93 3 6 0.00000018931
Brassica carinata ChrB04 1 CH_bca_9 6 7 5.90562e-20
Ceratophyllum demersum 9 1 CH_cde_182 2 2 0.000236939
Corchorus olitorius AWUE01019666.1 1 CH_col_78 2 2 0.000292099
Davidia involucrata GWHABJS00000013 1 CH_din_346 2 2 0.000150038
Physcomitrium patens Chr07 1 CH_ppa_94 2 2 0.0000612726
Quercus lobata 8 1 CH_qlo_672 2 2 0.0000516289
Utricularia gibba unitig_899 1 CH_ugi_165 2 2 0.0000734592
Vanilla planifolia CM028154.1 1 CH_vpl_266 2 2 0.000221664
Amborella trichopoda AmTr_v1.0_scaffold00004 2 CH_atr_93 3 6 0.00000018931
Brassica carinata ChrB04 2 CH_bca_9 6 7 5.90562e-20
Ceratophyllum demersum 9 2 CH_cde_182 2 2 0.000236939
Corchorus olitorius AWUE01019666.1 2 CH_col_78 2 2 0.000292099
Davidia involucrata GWHABJS00000013 2 CH_din_346 2 2 0.000150038
Physcomitrium patens Chr07 2 CH_ppa_94 2 2 0.0000612726
Quercus lobata 8 2 CH_qlo_672 2 2 0.0000516289
Utricularia gibba unitig_899 2 CH_ugi_165 2 2 0.0000734592
Vanilla planifolia CM028154.1 2 CH_vpl_266 2 2 0.000221664

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001