Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.lipid degradation.fatty acid degradation.auxiliary degradation activities.acyl-CoA thioesterase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_104 2 2 0.0000802568
Arabidopsis lyrata scaffold_1 1 CH_aly_165 3 8 0.00000146344
Cannabis sativa NC_044378.1 1 CH_cansat_143 3 7 0.000000905297
Corylus avellana 1 1 CH_cav_262 2 2 0.0000766695
Cucumis melo chr10 1 CH_cme_185 2 2 0.0000667111
Carica papaya supercontig_65 1 CH_cpa_220 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2123 1 CH_cqu_164 3 3 0.00000018859
Capsella rubella scaffold_1 1 CH_cru_173 3 7 0.00000112239
Erythranthe guttata scaffold_13 1 CH_egut_435 2 2 0.000436888
Fragaria vesca Fvb4 1 CH_fve_447 2 5 0.00058905
Gossypium hirsutum A04 1 CH_ghi_203 3 3 0.0000000213895
Gossypium hirsutum D04 1 CH_ghi_204 3 3 0.0000000213895
Gossypium raimondii Chr12 1 CH_gra_99 3 3 0.00000000431127
Lupinus albus Lalb_Chr04 1 CH_lal_202 2 2 0.0000524824
Medicago truncatula chr5 1 CH_mtr_248 3 5 0.0000000253208
Oryza sativa ssp. japonica chr02 1 CH_osa_350 2 3 0.000475289
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_66 6 19 0.00000000000000172019
Sequoiadendron giganteum chr4 1 CH_sgi_874 2 2 0.0000487151
Solanum lycopersicum SL4.0ch04 1 CH_sly_189 3 10 0.000000619989
Solanum pennellii Spenn-ch04 1 CH_spe_560 2 7 0.000933956
Solanum tuberosum ST4.03ch04 1 CH_stu_143 4 34 0.00000001871
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_249 2 2 0.0000929238
Vitis vinifera chr1 1 CH_vvi_318 2 3 0.00022818
Zea mays 2 1 CH_zma_223 2 2 0.000306788
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_104 2 2 0.0000802568
Arabidopsis lyrata scaffold_1 2 CH_aly_165 3 8 0.00000146344
Cannabis sativa NC_044378.1 2 CH_cansat_143 3 7 0.000000905297
Corylus avellana 1 2 CH_cav_262 2 2 0.0000766695
Cucumis melo chr10 2 CH_cme_185 2 2 0.0000667111
Carica papaya supercontig_65 2 CH_cpa_220 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2123 2 CH_cqu_164 3 3 0.00000018859
Capsella rubella scaffold_1 2 CH_cru_173 3 7 0.00000112239
Erythranthe guttata scaffold_13 2 CH_egut_435 2 2 0.000436888
Fragaria vesca Fvb4 2 CH_fve_447 2 5 0.00058905
Gossypium hirsutum A04 2 CH_ghi_203 3 3 0.0000000213895
Gossypium hirsutum D04 2 CH_ghi_204 3 3 0.0000000213895
Gossypium raimondii Chr12 2 CH_gra_99 3 3 0.00000000431127
Lupinus albus Lalb_Chr04 2 CH_lal_202 2 2 0.0000524824
Oryza sativa ssp. japonica chr02 2 CH_osa_350 2 3 0.000475289
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_66 6 19 0.00000000000000172019
Sequoiadendron giganteum chr4 2 CH_sgi_874 2 2 0.0000487151
Solanum lycopersicum SL4.0ch04 2 CH_sly_189 3 10 0.000000619989
Solanum pennellii Spenn-ch04 2 CH_spe_560 2 7 0.000933956
Solanum tuberosum ST4.03ch04 2 CH_stu_143 4 34 0.00000001871
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_249 2 2 0.0000929238
Vitis vinifera chr1 2 CH_vvi_318 2 3 0.00022818
Zea mays 2 2 CH_zma_223 2 2 0.000306788

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001