Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.lipid degradation.triacylglycerol lipase activities.diacyl-/triacylglycerol lipase activities.lipase (LIP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 1 | CH_arhy_287 | 3 | 3 | 0.00000109709 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.06 | 1 | CH_arhy_340 | 3 | 4 | 0.00000438756 |
| Amborella trichopoda | AmTr_v1.0_scaffold00074 | 1 | CH_atr_46 | 4 | 8 | 0.000000000526316 |
| Camellia sinensis var. sinensis | Chr7 | 1 | CH_camsi_18 | 7 | 7 | 8.78792e-23 |
| Cannabis sativa | NC_044376.1 | 1 | CH_cansat_122 | 3 | 3 | 0.000000129358 |
| Capsicum annuum | PGAv.1.6.scaffold473 | 1 | CH_can_404 | 2 | 2 | 0.000495663 |
| Coffea canephora | chr2 | 1 | CH_ccan_280 | 2 | 4 | 0.000255531 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_141 | 3 | 3 | 0.000000100941 |
| Carica papaya | supercontig_132 | 1 | CH_cpa_63 | 3 | 3 | 0.00000013557 |
| Daucus carota | DCARv2_Chr1 | 1 | CH_dca_25 | 5 | 5 | 0.000000000000159733 |
| Durio zibethinus | NW_019167893.1 | 1 | CH_dzi_360 | 2 | 2 | 0.000695233 |
| Eucalyptus grandis | Chr10 | 1 | CH_egr_247 | 4 | 4 | 0.0000000000210526 |
| Fragaria x ananassa | Fvb5-4 | 1 | CH_fan_250 | 5 | 65 | 0.00000411388 |
| Fragaria x ananassa | Fvb6-2 | 1 | CH_fan_254 | 3 | 3 | 0.00000469361 |
| Fragaria x ananassa | Fvb5-3 | 1 | CH_fan_344 | 4 | 30 | 0.0000425445 |
| Fragaria x ananassa | Fvb5-2 | 1 | CH_fan_458 | 3 | 8 | 0.000262502 |
| Fragaria x ananassa | Fvb5-1 | 1 | CH_fan_487 | 4 | 48 | 0.000300618 |
| Fragaria vesca | Fvb6 | 1 | CH_fve_61 | 4 | 4 | 0.000000000077286 |
| Lupinus albus | Lalb_Chr14 | 1 | CH_lal_13 | 6 | 6 | 8.28014e-18 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_543 | 2 | 2 | 0.000359324 |
| Magnolia biondii | Chr07 | 1 | CH_mbi_92 | 4 | 9 | 0.000000001515 |
| Malus domestica | Chr17 | 1 | CH_mdo_268 | 3 | 4 | 0.00000142347 |
| Malus domestica | Chr09 | 1 | CH_mdo_45 | 5 | 5 | 0.00000000000000716604 |
| Manihot esculenta | Chromosome12 | 1 | CH_mes_183 | 3 | 3 | 0.000000313221 |
| Medicago truncatula | chr6 | 1 | CH_mtr_363 | 3 | 3 | 0.000000921714 |
| Medicago truncatula | chr3 | 1 | CH_mtr_485 | 3 | 7 | 0.0000322355 |
| Punica granatum | NC_045130.1 | 1 | CH_pgr_106 | 3 | 3 | 0.0000000844584 |
| Prunus persica | Pp03 | 1 | CH_ppe_189 | 3 | 3 | 0.000000166944 |
| Populus trichocarpa | Chr14 | 1 | CH_ptr_176 | 3 | 3 | 0.000000100229 |
| Quercus lobata | 8 | 1 | CH_qlo_230 | 4 | 4 | 0.000000000052024 |
| Quercus lobata | CM012294 | 1 | CH_qlo_450 | 3 | 3 | 0.000000335867 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 1 | CH_rch_156 | 4 | 4 | 0.000000000345941 |
| Rhododendron simsii | chr06 | 1 | CH_rsi_75 | 4 | 4 | 0.00000000000403118 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_133 | 3 | 4 | 0.0000000496807 |
| Salix brachista | GWHAAZH00000014 | 1 | CH_sbr_338 | 2 | 2 | 0.000378084 |
| Sechium edule | LG08 | 1 | CH_sed_335 | 2 | 2 | 0.000713419 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_174 | 5 | 6 | 0.0000000000000141933 |
| Theobroma cacao | Chromosome_1 | 1 | CH_tca_395 | 2 | 2 | 0.000439432 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_133 | 3 | 4 | 0.000000518054 |
| Vitis vinifera | chr12 | 1 | CH_vvi_206 | 3 | 7 | 0.00000303639 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 2 | CH_arhy_287 | 3 | 3 | 0.00000109709 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.06 | 2 | CH_arhy_340 | 3 | 4 | 0.00000438756 |
| Amborella trichopoda | AmTr_v1.0_scaffold00074 | 2 | CH_atr_46 | 4 | 8 | 0.000000000526316 |
| Camellia sinensis var. sinensis | Chr7 | 2 | CH_camsi_18 | 7 | 7 | 8.78792e-23 |
| Cannabis sativa | NC_044376.1 | 2 | CH_cansat_122 | 3 | 3 | 0.000000129358 |
| Capsicum annuum | PGAv.1.6.scaffold473 | 2 | CH_can_404 | 2 | 2 | 0.000495663 |
| Coffea canephora | chr2 | 2 | CH_ccan_280 | 2 | 4 | 0.000255531 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_141 | 3 | 3 | 0.000000100941 |
| Carica papaya | supercontig_132 | 2 | CH_cpa_63 | 3 | 3 | 0.00000013557 |
| Daucus carota | DCARv2_Chr1 | 2 | CH_dca_25 | 5 | 5 | 0.000000000000159733 |
| Durio zibethinus | NW_019167893.1 | 2 | CH_dzi_360 | 2 | 2 | 0.000695233 |
| Eucalyptus grandis | Chr10 | 2 | CH_egr_247 | 4 | 4 | 0.0000000000210526 |
| Fragaria x ananassa | Fvb5-4 | 2 | CH_fan_250 | 5 | 65 | 0.00000411388 |
| Fragaria x ananassa | Fvb6-2 | 2 | CH_fan_254 | 3 | 3 | 0.00000469361 |
| Fragaria x ananassa | Fvb5-3 | 2 | CH_fan_344 | 4 | 30 | 0.0000425445 |
| Fragaria x ananassa | Fvb5-2 | 2 | CH_fan_458 | 3 | 8 | 0.000262502 |
| Fragaria x ananassa | Fvb5-1 | 2 | CH_fan_487 | 4 | 48 | 0.000300618 |
| Fragaria vesca | Fvb6 | 2 | CH_fve_61 | 4 | 4 | 0.000000000077286 |
| Lupinus albus | Lalb_Chr14 | 2 | CH_lal_13 | 6 | 6 | 8.28014e-18 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_543 | 2 | 2 | 0.000359324 |
| Magnolia biondii | Chr07 | 2 | CH_mbi_92 | 4 | 9 | 0.000000001515 |
| Malus domestica | Chr17 | 2 | CH_mdo_268 | 3 | 4 | 0.00000142347 |
| Malus domestica | Chr09 | 2 | CH_mdo_45 | 5 | 5 | 0.00000000000000716604 |
| Manihot esculenta | Chromosome12 | 2 | CH_mes_183 | 3 | 3 | 0.000000313221 |
| Punica granatum | NC_045130.1 | 2 | CH_pgr_106 | 3 | 3 | 0.0000000844584 |
| Prunus persica | Pp03 | 2 | CH_ppe_189 | 3 | 3 | 0.000000166944 |
| Populus trichocarpa | Chr14 | 2 | CH_ptr_176 | 3 | 3 | 0.000000100229 |
| Quercus lobata | 8 | 2 | CH_qlo_230 | 4 | 4 | 0.000000000052024 |
| Quercus lobata | CM012294 | 2 | CH_qlo_450 | 3 | 3 | 0.000000335867 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 2 | CH_rch_156 | 4 | 4 | 0.000000000345941 |
| Rhododendron simsii | chr06 | 2 | CH_rsi_75 | 4 | 4 | 0.00000000000403118 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_133 | 3 | 4 | 0.0000000496807 |
| Salix brachista | GWHAAZH00000014 | 2 | CH_sbr_338 | 2 | 2 | 0.000378084 |
| Sechium edule | LG08 | 2 | CH_sed_335 | 2 | 2 | 0.000713419 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_174 | 5 | 6 | 0.0000000000000141933 |
| Theobroma cacao | Chromosome_1 | 2 | CH_tca_395 | 2 | 2 | 0.000439432 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_133 | 3 | 4 | 0.000000518054 |
| Vitis vinifera | chr12 | 2 | CH_vvi_206 | 3 | 7 | 0.00000303639 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |