Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.phytosterol biosynthesis.phytosterol esterification.acyl-CoA:cholesterol acyltransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-3 1 CH_aar_3 10 11 9.77777e-30
Acer truncatum chr2 1 CH_acertr_197 3 3 0.0000050694
Acer truncatum chr11 1 CH_acertr_366 3 6 0.000101265
Arabidopsis lyrata scaffold_8 1 CH_aly_7 7 7 2.34534e-22
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 1 CH_amhyb_35 3 3 0.0000000425145
Aquilegia oxysepala CHR04 1 CH_aox_113 3 3 0.00000934909
Aquilegia oxysepala CHR01 1 CH_aox_128 3 4 0.0000373769
Aquilegia oxysepala CHR01 1 CH_aox_3 8 9 4.57434e-21
Aquilegia oxysepala CHR02 1 CH_aox_332 3 9 0.00078287
Arabidopsis thaliana Chr1 1 CH_ath_381 3 23 0.000478629
Arabidopsis thaliana Chr5 1 CH_ath_7 7 7 3.4494e-23
Brassica carinata ChrB05 1 CH_bca_12 7 9 1.15518e-18
Brassica carinata ChrC01 1 CH_bca_31 6 12 0.00000000000010263
Brassica carinata ChrC04 1 CH_bca_314 4 11 0.000000395006
Brassica carinata ChrC03 1 CH_bca_415 3 3 0.00000373973
Brassica carinata ChrB08 1 CH_bca_50 5 6 0.00000000000222962
Brassica napus A02 1 CH_bna_104 4 4 0.000000000888308
Brassica napus A03 1 CH_bna_12 6 6 6.64981e-17
Brassica napus C09 1 CH_bna_153 4 6 0.0000000133184
Brassica napus A10 1 CH_bna_260 4 13 0.000000633816
Brassica napus C03 1 CH_bna_380 3 4 0.000012354
Brassica napus C02 1 CH_bna_68 5 9 0.0000000000311179
Brassica oleracea C9 1 CH_bol_39 5 13 0.0000000000680868
Brassica oleracea C2 1 CH_bol_67 4 6 0.00000000373887
Brassica oleracea C3 1 CH_bol_76 4 7 0.0000000087224
Brassica rapa A03 1 CH_bra_11 6 6 2.62829e-17
Brassica rapa A10 1 CH_bra_148 3 4 0.00000619152
Brassica rapa A02 1 CH_bra_29 5 5 0.000000000000111301
Camellia sinensis var. sinensis Chr8 1 CH_camsi_291 3 3 0.000000176627
Cannabis sativa NC_044371.1 1 CH_cansat_138 3 3 0.000000543303
Cannabis sativa NC_044372.1 1 CH_cansat_36 5 6 0.00000000000010542
Capsicum annuum PGAv.1.6.scaffold1186 1 CH_can_61 4 5 0.0000000000422852
Citrus clementina scaffold_1 1 CH_ccl_410 2 2 0.000246093
Carpinus fangiana Cfa08 1 CH_cfa_96 3 3 0.0000000344157
Cardamine hirsuta Chr8 1 CH_chi_40 5 5 0.0000000000000791078
Cardamine hirsuta Chr5 1 CH_chi_69 4 4 0.000000000326964
Citrullus lanatus CG_Chr09 1 CH_cla_15 4 4 0.000000000146628
Citrullus lanatus CG_Chr10 1 CH_cla_63 3 3 0.000000661086
Cucumis melo chr04 1 CH_cme_48 4 4 0.0000000000623531
Cucumis melo chr01 1 CH_cme_63 4 8 0.00000000436227
Carica papaya supercontig_12 1 CH_cpa_353 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_2715 1 CH_cqu_281 3 8 0.0000158312
Chlamydomonas reinhardtii chromosome_7 1 CH_cre_11 4 10 0.0000000647967
Capsella rubella scaffold_8 1 CH_cru_6 7 7 1.44452e-21
Cucumis sativus L. chr3 1 CH_csa_75 4 6 0.0000000054949
Cucumis sativus L. chr7 1 CH_csa_85 5 29 0.0000000108447
Daucus carota DCARv2_Chr8 1 CH_dca_484 2 2 0.000956663
Davidia involucrata GWHABJS00000013 1 CH_din_188 3 6 0.00000420071
Durio zibethinus NW_019167993.1 1 CH_dzi_335 2 2 0.000463489
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_103 3 4 0.0000000120811
Eucalyptus grandis Chr04 1 CH_egr_272 5 11 0.000000000121916
Eutrema salsugineum scaffold_2 1 CH_esa_14 6 7 3.38853e-17
Fragaria vesca Fvb3 1 CH_fve_167 3 3 0.000000437284
Gossypium hirsutum A04 1 CH_ghi_127 4 4 0.000000000103949
Gossypium hirsutum D05 1 CH_ghi_128 4 4 0.000000000103949
Glycine max Gm08 1 CH_gma_268 3 6 0.00000950418
Glycine max Gm18 1 CH_gma_80 5 19 0.000000000143107
Gossypium raimondii Chr09 1 CH_gra_70 4 4 0.00000000003236
Helianthus annuus HanXRQChr05 1 CH_han_17 7 7 8.65578e-23
Lupinus albus Lalb_Chr20 1 CH_lal_46 4 4 0.0000000000546471
Lupinus albus Lalb_Chr03 1 CH_lal_98 3 3 0.000000347064
Lonicera japonica GWHAAZE00000008 1 CH_lonja_251 3 3 0.00000118358
Lonicera japonica GWHAAZE00000001 1 CH_lonja_252 3 3 0.00000118358
Lonicera japonica GWHAAZE00000005 1 CH_lonja_425 3 10 0.000141799
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_63 5 7 0.00000000000141459
Magnolia biondii Chr16 1 CH_mbi_74 4 8 0.0000000000240551
Malus domestica Chr03 1 CH_mdo_262 3 4 0.00000103527
Malus domestica Chr02 1 CH_mdo_291 3 5 0.00000258786
Manihot esculenta Chromosome07 1 CH_mes_125 4 4 0.00000000162583
Manihot esculenta Chromosome03 1 CH_mes_13 10 13 4.6551e-28
Nicotiana tabacum Nitab4.5_0000143 1 CH_nta_169 2 2 0.000658364
Nicotiana tabacum Nitab4.5_0001198 1 CH_nta_170 2 2 0.000658364
Petunia axillaris Peaxi162Scf00235 1 CH_pax_99 3 4 0.000000296979
Punica granatum NC_045130.1 1 CH_pgr_139 3 3 0.0000010135
Punica granatum NC_045127.1 1 CH_pgr_63 4 4 0.00000000026619
Prunus persica Pp04 1 CH_ppe_206 3 3 0.000000467444
Pisum sativum chr1LG6 1 CH_psa_300 2 2 0.00015649
Papaver somniferum NC_039361.1 1 CH_pso_166 4 7 0.00000000581019
Populus trichocarpa Chr09 1 CH_ptr_208 3 3 0.000000601371
Phaseolus vulgaris Chr06 1 CH_pvu_145 3 3 0.000000161953
Quercus lobata 8 1 CH_qlo_562 3 6 0.00000671448
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_153 5 17 0.000000000234219
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_507 3 8 0.0000485487
Rhododendron simsii chr13 1 CH_rsi_256 3 3 0.00000424763
Rhododendron simsii chr06 1 CH_rsi_257 3 3 0.00000424763
Rhododendron simsii chr02 1 CH_rsi_27 9 17 2.51592e-22
Salvia bowleyana GWHASIU00000004 1 CH_sbo_135 3 3 0.0000000621034
Salvia bowleyana GWHASIU00000001 1 CH_sbo_457 2 2 0.00068247
Salix brachista GWHAAZH00000006 1 CH_sbr_45 5 8 0.00000000000851809
Sechium edule LG05 1 CH_sed_42 4 4 0.000000000137269
Solanum lycopersicum SL4.0ch11 1 CH_sly_22 7 7 1.06297e-21
Schrenkiella parvula ch6-6 1 CH_spa_19 5 5 0.0000000000000363231
Solanum pennellii Spenn-ch11 1 CH_spe_56 4 4 0.00000000000924027
Solanum pennellii Spenn-ch07 1 CH_spe_571 2 2 0.00093406
Solanum tuberosum ST4.03ch11 1 CH_stu_46 5 5 0.00000000000000289688
Trochodendron aralioides group0 1 CH_tar_169 3 3 0.00000118949
Trochodendron aralioides group6 1 CH_tar_6 7 7 2.92192e-21
Theobroma cacao Chromosome_4 1 CH_tca_238 3 4 0.0000117112
Theobroma cacao Chromosome_7 1 CH_tca_43 6 12 0.000000000000131377
Tripterygium wilfordii NC_052250.1 1 CH_twi_116 3 3 0.00000169709
Utricularia gibba unitig_8 1 CH_ugi_82 3 5 0.00000161855
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_115 3 3 0.000000129529
Vigna mungo CM024075.1 1 CH_vmu_405 2 2 0.000646141
Vitis vinifera chr19 1 CH_vvi_357 2 2 0.000228189
Aethionema arabicum LG-3 2 CH_aar_3 10 11 9.77777e-30
Acer truncatum chr2 2 CH_acertr_197 3 3 0.0000050694
Acer truncatum chr11 2 CH_acertr_366 3 6 0.000101265
Arabidopsis lyrata scaffold_8 2 CH_aly_7 7 7 2.34534e-22
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 2 CH_amhyb_35 3 3 0.0000000425145
Aquilegia oxysepala CHR04 2 CH_aox_113 3 3 0.00000934909
Aquilegia oxysepala CHR01 2 CH_aox_128 3 4 0.0000373769
Aquilegia oxysepala CHR01 2 CH_aox_3 8 9 4.57434e-21
Aquilegia oxysepala CHR02 2 CH_aox_332 3 9 0.00078287
Arabidopsis thaliana Chr1 2 CH_ath_381 3 23 0.000478629
Arabidopsis thaliana Chr5 2 CH_ath_7 7 7 3.4494e-23
Brassica carinata ChrB05 2 CH_bca_12 7 9 1.15518e-18
Brassica carinata ChrC01 2 CH_bca_31 6 12 0.00000000000010263
Brassica carinata ChrC04 2 CH_bca_314 4 11 0.000000395006
Brassica carinata ChrC03 2 CH_bca_415 3 3 0.00000373973
Brassica carinata ChrB08 2 CH_bca_50 5 6 0.00000000000222962
Brassica oleracea C9 2 CH_bol_39 5 13 0.0000000000680868
Brassica oleracea C2 2 CH_bol_67 4 6 0.00000000373887
Brassica oleracea C3 2 CH_bol_76 4 7 0.0000000087224
Brassica rapa A03 2 CH_bra_11 6 6 2.62829e-17
Brassica rapa A10 2 CH_bra_148 3 4 0.00000619152
Brassica rapa A02 2 CH_bra_29 5 5 0.000000000000111301
Camellia sinensis var. sinensis Chr8 2 CH_camsi_291 3 3 0.000000176627
Cannabis sativa NC_044371.1 2 CH_cansat_138 3 3 0.000000543303
Cannabis sativa NC_044372.1 2 CH_cansat_36 5 6 0.00000000000010542
Capsicum annuum PGAv.1.6.scaffold1186 2 CH_can_61 4 5 0.0000000000422852
Citrus clementina scaffold_1 2 CH_ccl_410 2 2 0.000246093
Carpinus fangiana Cfa08 2 CH_cfa_96 3 3 0.0000000344157
Cardamine hirsuta Chr8 2 CH_chi_40 5 5 0.0000000000000791078
Cardamine hirsuta Chr5 2 CH_chi_69 4 4 0.000000000326964
Citrullus lanatus CG_Chr09 2 CH_cla_15 4 4 0.000000000146628
Citrullus lanatus CG_Chr10 2 CH_cla_63 3 3 0.000000661086
Cucumis melo chr04 2 CH_cme_48 4 4 0.0000000000623531
Cucumis melo chr01 2 CH_cme_63 4 8 0.00000000436227
Carica papaya supercontig_12 2 CH_cpa_353 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_2715 2 CH_cqu_281 3 8 0.0000158312
Chlamydomonas reinhardtii chromosome_7 2 CH_cre_11 4 10 0.0000000647967
Capsella rubella scaffold_8 2 CH_cru_6 7 7 1.44452e-21
Cucumis sativus L. chr3 2 CH_csa_75 4 6 0.0000000054949
Cucumis sativus L. chr7 2 CH_csa_85 5 29 0.0000000108447
Daucus carota DCARv2_Chr8 2 CH_dca_484 2 2 0.000956663
Davidia involucrata GWHABJS00000013 2 CH_din_188 3 6 0.00000420071
Durio zibethinus NW_019167993.1 2 CH_dzi_335 2 2 0.000463489
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_103 3 4 0.0000000120811
Eucalyptus grandis Chr04 2 CH_egr_272 5 11 0.000000000121916
Eucalyptus grandis Chr05 2 CH_egr_459 4 10 0.000000172124
Eutrema salsugineum scaffold_2 2 CH_esa_14 6 7 3.38853e-17
Fragaria vesca Fvb3 2 CH_fve_167 3 3 0.000000437284
Gossypium hirsutum A04 2 CH_ghi_127 4 4 0.000000000103949
Gossypium hirsutum D05 2 CH_ghi_128 4 4 0.000000000103949
Glycine max Gm08 2 CH_gma_268 3 6 0.00000950418
Glycine max Gm18 2 CH_gma_80 5 19 0.000000000143107
Gossypium raimondii Chr09 2 CH_gra_70 4 4 0.00000000003236
Helianthus annuus HanXRQChr05 2 CH_han_17 7 7 8.65578e-23
Lupinus albus Lalb_Chr20 2 CH_lal_46 4 4 0.0000000000546471
Lupinus albus Lalb_Chr03 2 CH_lal_98 3 3 0.000000347064
Lonicera japonica GWHAAZE00000008 2 CH_lonja_251 3 3 0.00000118358
Lonicera japonica GWHAAZE00000001 2 CH_lonja_252 3 3 0.00000118358
Lonicera japonica GWHAAZE00000005 2 CH_lonja_425 3 10 0.000141799
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_63 5 7 0.00000000000141459
Magnolia biondii Chr16 2 CH_mbi_74 4 8 0.0000000000240551
Malus domestica Chr03 2 CH_mdo_262 3 4 0.00000103527
Malus domestica Chr02 2 CH_mdo_291 3 5 0.00000258786
Manihot esculenta Chromosome07 2 CH_mes_125 4 4 0.00000000162583
Manihot esculenta Chromosome03 2 CH_mes_13 10 13 4.6551e-28
Nicotiana tabacum Nitab4.5_0000143 2 CH_nta_169 2 2 0.000658364
Nicotiana tabacum Nitab4.5_0001198 2 CH_nta_170 2 2 0.000658364
Petunia axillaris Peaxi162Scf00235 2 CH_pax_99 3 4 0.000000296979
Punica granatum NC_045130.1 2 CH_pgr_139 3 3 0.0000010135
Punica granatum NC_045127.1 2 CH_pgr_63 4 4 0.00000000026619
Prunus persica Pp04 2 CH_ppe_206 3 3 0.000000467444
Pisum sativum chr1LG6 2 CH_psa_300 2 2 0.00015649
Papaver somniferum NC_039361.1 2 CH_pso_166 4 7 0.00000000581019
Populus trichocarpa Chr09 2 CH_ptr_208 3 3 0.000000601371
Phaseolus vulgaris Chr06 2 CH_pvu_145 3 3 0.000000161953
Quercus lobata 8 2 CH_qlo_562 3 6 0.00000671448
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_153 5 17 0.000000000234219
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_507 3 8 0.0000485487
Rhododendron simsii chr13 2 CH_rsi_256 3 3 0.00000424763
Rhododendron simsii chr06 2 CH_rsi_257 3 3 0.00000424763
Rhododendron simsii chr02 2 CH_rsi_27 9 17 2.51592e-22
Salvia bowleyana GWHASIU00000004 2 CH_sbo_135 3 3 0.0000000621034
Salvia bowleyana GWHASIU00000001 2 CH_sbo_457 2 2 0.00068247
Salix brachista GWHAAZH00000006 2 CH_sbr_45 5 8 0.00000000000851809
Sechium edule LG05 2 CH_sed_42 4 4 0.000000000137269
Solanum lycopersicum SL4.0ch11 2 CH_sly_22 7 7 1.06297e-21
Schrenkiella parvula ch6-6 2 CH_spa_19 5 5 0.0000000000000363231
Solanum pennellii Spenn-ch11 2 CH_spe_56 4 4 0.00000000000924027
Solanum pennellii Spenn-ch07 2 CH_spe_571 2 2 0.00093406
Solanum tuberosum ST4.03ch11 2 CH_stu_46 5 5 0.00000000000000289688
Trochodendron aralioides group0 2 CH_tar_169 3 3 0.00000118949
Trochodendron aralioides group6 2 CH_tar_6 7 7 2.92192e-21
Theobroma cacao Chromosome_4 2 CH_tca_238 3 4 0.0000117112
Theobroma cacao Chromosome_7 2 CH_tca_43 6 12 0.000000000000131377
Tripterygium wilfordii NC_052250.1 2 CH_twi_116 3 3 0.00000169709
Utricularia gibba unitig_8 2 CH_ugi_82 3 5 0.00000161855
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_115 3 3 0.000000129529
Vigna mungo CM024075.1 2 CH_vmu_405 2 2 0.000646141
Vitis vinifera chr19 2 CH_vvi_357 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001