Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.delta7-sterol C-5 desaturase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_13 1 CH_amhyb_157 2 2 0.0000841751
Brassica carinata ChrC01 1 CH_bca_245 3 3 0.000000113097
Brassica carinata ChrC09 1 CH_bca_246 3 3 0.000000113097
Brassica carinata ChrB04 1 CH_bca_247 3 3 0.000000113097
Brassica napus C03 1 CH_bna_187 3 3 0.000000061949
Brassica oleracea C3 1 CH_bol_33 4 4 0.00000000000366692
Brassica oleracea C1 1 CH_bol_418 2 2 0.000686409
Brassica rapa A03 1 CH_bra_70 3 3 0.0000000110588
Beta vulgaris Chr3_EL10_PGA_scaffold7 1 CH_bvu_237 2 2 0.000248375
Cardamine hirsuta Chr3 1 CH_chi_110 3 3 0.0000000286668
Durio zibethinus NW_019167893.1 1 CH_dzi_62 3 3 0.0000000032224
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_125 3 4 0.0000000483236
Erythranthe guttata scaffold_8 1 CH_egut_311 2 2 0.0000728147
Eutrema salsugineum scaffold_13 1 CH_esa_260 2 2 0.00022845
Medicago truncatula chr6 1 CH_mtr_228 3 4 0.0000000101285
Solanum lycopersicum SL4.0ch02 1 CH_sly_430 2 2 0.000176082
Solanum tuberosum ST4.03ch02 1 CH_stu_474 2 2 0.000153736
Tarenaya hassleriana NW_010967707.1 1 CH_tha_188 2 2 0.000419082
Vitis vinifera chr1 1 CH_vvi_356 2 2 0.000228189
Amaranthus hybridus AmaHy_arrow1_Scaffold_13 2 CH_amhyb_157 2 2 0.0000841751
Brassica carinata ChrC01 2 CH_bca_245 3 3 0.000000113097
Brassica carinata ChrC09 2 CH_bca_246 3 3 0.000000113097
Brassica carinata ChrB04 2 CH_bca_247 3 3 0.000000113097
Brassica oleracea C3 2 CH_bol_33 4 4 0.00000000000366692
Brassica oleracea C1 2 CH_bol_418 2 2 0.000686409
Brassica rapa A03 2 CH_bra_70 3 3 0.0000000110588
Beta vulgaris Chr3_EL10_PGA_scaffold7 2 CH_bvu_237 2 2 0.000248375
Cardamine hirsuta Chr3 2 CH_chi_110 3 3 0.0000000286668
Durio zibethinus NW_019167893.1 2 CH_dzi_62 3 3 0.0000000032224
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_125 3 4 0.0000000483236
Erythranthe guttata scaffold_8 2 CH_egut_311 2 2 0.0000728147
Eutrema salsugineum scaffold_13 2 CH_esa_260 2 2 0.00022845
Solanum lycopersicum SL4.0ch02 2 CH_sly_430 2 2 0.000176082
Solanum tuberosum ST4.03ch02 2 CH_stu_474 2 2 0.000153736
Tarenaya hassleriana NW_010967707.1 2 CH_tha_188 2 2 0.000419082
Vitis vinifera chr1 2 CH_vvi_356 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001