Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.obtusifoliol 14-alpha demethylase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 1 CH_acertr_441 2 2 0.000211491
Aquilegia oxysepala CHR01 1 CH_aox_240 2 2 0.000240597
Brassica carinata ChrC09 1 CH_bca_483 3 15 0.00001091
Brassica napus C01 1 CH_bna_35 6 43 0.000000000000134366
Beta vulgaris Chr3_EL10_PGA_scaffold7 1 CH_bvu_44 4 6 0.000000000127683
Chenopodium quinoa C_Quinoa_Scaffold_1759 1 CH_cqu_97 4 6 0.00000000100505
Medicago truncatula chr8 1 CH_mtr_590 2 3 0.000123256
Oryza sativa ssp. japonica chr05 1 CH_osa_128 3 3 0.00000035144
Rhododendron simsii chr12 1 CH_rsi_414 2 3 0.000193586
Sequoiadendron giganteum chr4 1 CH_sgi_933 2 2 0.0000487151
Selenicereus undatus Scaffold_33675 1 CH_sun_147 2 2 0.0000726639
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_271 2 2 0.0000929238
Acer truncatum chr12 2 CH_acertr_441 2 2 0.000211491
Aquilegia oxysepala CHR01 2 CH_aox_240 2 2 0.000240597
Brassica carinata ChrC09 2 CH_bca_483 3 15 0.00001091
Beta vulgaris Chr3_EL10_PGA_scaffold7 2 CH_bvu_44 4 6 0.000000000127683
Chenopodium quinoa C_Quinoa_Scaffold_1759 2 CH_cqu_97 4 6 0.00000000100505
Oryza sativa ssp. japonica chr05 2 CH_osa_128 3 3 0.00000035144
Rhododendron simsii chr12 2 CH_rsi_414 2 3 0.000193586
Sequoiadendron giganteum chr4 2 CH_sgi_933 2 2 0.0000487151
Selenicereus undatus Scaffold_33675 2 CH_sun_147 2 2 0.0000726639
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_271 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001