Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.sphingolipid biosynthesis.sphingolipid fatty acid 2-hydroxylase (FAH)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr10 | 1 | CH_acertr_399 | 2 | 3 | 0.000211484 |
| Avicennia marina | ScioBoG_19538_HRSCAF_19626 | 1 | CH_ama_107 | 2 | 2 | 0.000258665 |
| Brassica carinata | ChrC02 | 1 | CH_bca_271 | 3 | 3 | 0.000000196034 |
| Camellia sinensis var. sinensis | Chr8 | 1 | CH_camsi_672 | 2 | 2 | 0.000137564 |
| Cannabis sativa | NC_044378.1 | 1 | CH_cansat_332 | 2 | 4 | 0.000393959 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_338 | 2 | 2 | 0.0000820311 |
| Citrullus lanatus | CG_Chr01 | 1 | CH_cla_143 | 2 | 2 | 0.0000887115 |
| Cucumis melo | chr08 | 1 | CH_cme_204 | 2 | 2 | 0.0000667111 |
| Cucumis sativus L. | chr6 | 1 | CH_csa_225 | 2 | 2 | 0.0000834759 |
| Erythranthe guttata | scaffold_13 | 1 | CH_egut_382 | 2 | 2 | 0.000218444 |
| Fragaria x ananassa | Fvb3-3 | 1 | CH_fan_142 | 3 | 3 | 0.000000112988 |
| Fragaria x ananassa | Fvb3-2 | 1 | CH_fan_143 | 3 | 3 | 0.000000112988 |
| Fragaria x ananassa | Fvb3-4 | 1 | CH_fan_71 | 4 | 8 | 0.000000000658396 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_57 | 4 | 8 | 0.0000000000429316 |
| Lupinus albus | Lalb_Chr13 | 1 | CH_lal_382 | 2 | 2 | 0.000524824 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_146 | 4 | 15 | 0.00000000439554 |
| Malus domestica | Chr05 | 1 | CH_mdo_585 | 2 | 2 | 0.000227527 |
| Malus domestica | Chr10 | 1 | CH_mdo_724 | 2 | 3 | 0.000682551 |
| Medicago truncatula | chr4 | 1 | CH_mtr_636 | 2 | 2 | 0.000123259 |
| Nicotiana tabacum | Nitab4.5_0000076 | 1 | CH_nta_174 | 2 | 2 | 0.000658364 |
| Petunia axillaris | Peaxi162Scf00395 | 1 | CH_pax_60 | 3 | 3 | 0.00000000742514 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_123 | 4 | 7 | 0.00000000000665232 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_461 | 2 | 2 | 0.000193592 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_349 | 2 | 2 | 0.000136494 |
| Sechium edule | LG10 | 1 | CH_sed_267 | 2 | 2 | 0.000214026 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_510 | 2 | 3 | 0.000528221 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_379 | 2 | 2 | 0.000133437 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_479 | 2 | 2 | 0.000153736 |
| Tripterygium wilfordii | NC_052247.1 | 1 | CH_twi_187 | 2 | 2 | 0.0000557507 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_283 | 2 | 2 | 0.0000929238 |
| Vitis vinifera | chr10 | 1 | CH_vvi_293 | 2 | 2 | 0.000076063 |
| Acer truncatum | chr10 | 2 | CH_acertr_399 | 2 | 3 | 0.000211484 |
| Avicennia marina | ScioBoG_19538_HRSCAF_19626 | 2 | CH_ama_107 | 2 | 2 | 0.000258665 |
| Brassica carinata | ChrC02 | 2 | CH_bca_271 | 3 | 3 | 0.000000196034 |
| Camellia sinensis var. sinensis | Chr8 | 2 | CH_camsi_672 | 2 | 2 | 0.000137564 |
| Cannabis sativa | NC_044378.1 | 2 | CH_cansat_332 | 2 | 4 | 0.000393959 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_338 | 2 | 2 | 0.0000820311 |
| Citrullus lanatus | CG_Chr01 | 2 | CH_cla_143 | 2 | 2 | 0.0000887115 |
| Cucumis melo | chr08 | 2 | CH_cme_204 | 2 | 2 | 0.0000667111 |
| Cucumis sativus L. | chr6 | 2 | CH_csa_225 | 2 | 2 | 0.0000834759 |
| Erythranthe guttata | scaffold_13 | 2 | CH_egut_382 | 2 | 2 | 0.000218444 |
| Fragaria x ananassa | Fvb3-3 | 2 | CH_fan_142 | 3 | 3 | 0.000000112988 |
| Fragaria x ananassa | Fvb3-2 | 2 | CH_fan_143 | 3 | 3 | 0.000000112988 |
| Fragaria x ananassa | Fvb3-4 | 2 | CH_fan_71 | 4 | 8 | 0.000000000658396 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_57 | 4 | 8 | 0.0000000000429316 |
| Lupinus albus | Lalb_Chr13 | 2 | CH_lal_382 | 2 | 2 | 0.000524824 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_146 | 4 | 15 | 0.00000000439554 |
| Malus domestica | Chr05 | 2 | CH_mdo_585 | 2 | 2 | 0.000227527 |
| Malus domestica | Chr10 | 2 | CH_mdo_724 | 2 | 3 | 0.000682551 |
| Nicotiana tabacum | Nitab4.5_0000076 | 2 | CH_nta_174 | 2 | 2 | 0.000658364 |
| Petunia axillaris | Peaxi162Scf00395 | 2 | CH_pax_60 | 3 | 3 | 0.00000000742514 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_123 | 4 | 7 | 0.00000000000665232 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_461 | 2 | 2 | 0.000193592 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_349 | 2 | 2 | 0.000136494 |
| Sechium edule | LG10 | 2 | CH_sed_267 | 2 | 2 | 0.000214026 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_510 | 2 | 3 | 0.000528221 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_379 | 2 | 2 | 0.000133437 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_479 | 2 | 2 | 0.000153736 |
| Tripterygium wilfordii | NC_052247.1 | 2 | CH_twi_187 | 2 | 2 | 0.0000557507 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_283 | 2 | 2 | 0.0000929238 |
| Vitis vinifera | chr10 | 2 | CH_vvi_293 | 2 | 2 | 0.000076063 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |