Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.glycerolipid biosynthesis.phosphatidate.endoplasmic reticulum phosphatidate biosynthesis.lysophosphatidate acyltransferase (LPAT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 1 CH_acertr_557 2 2 0.00070497
Arabidopsis lyrata scaffold_1 1 CH_aly_417 2 2 0.000660044
Camellia sinensis var. sinensis Chr10 1 CH_camsi_826 2 2 0.000458547
Carya illinoinensis Chr05 1 CH_cil_373 3 11 0.0000797661
Carica papaya supercontig_84 1 CH_cpa_389 2 2 0.000950661
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_525 2 2 0.000942317
Malus domestica Chr03 1 CH_mdo_741 2 2 0.000796344
Prunus persica Pp04 1 CH_ppe_507 2 2 0.000745962
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_358 3 6 0.00000166833
Sequoiadendron giganteum chr7 1 CH_sgi_1313 2 2 0.000487151
Sequoiadendron giganteum chr1 1 CH_sgi_560 3 5 0.00000035594
Theobroma cacao Chromosome_9 1 CH_tca_436 2 2 0.000732386
Acer truncatum chr5 2 CH_acertr_557 2 2 0.00070497
Arabidopsis lyrata scaffold_1 2 CH_aly_417 2 2 0.000660044
Camellia sinensis var. sinensis Chr10 2 CH_camsi_826 2 2 0.000458547
Carya illinoinensis Chr05 2 CH_cil_373 3 11 0.0000797661
Carica papaya supercontig_84 2 CH_cpa_389 2 2 0.000950661
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_525 2 2 0.000942317
Malus domestica Chr03 2 CH_mdo_741 2 2 0.000796344
Prunus persica Pp04 2 CH_ppe_507 2 2 0.000745962
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_358 3 6 0.00000166833
Sequoiadendron giganteum chr7 2 CH_sgi_1313 2 2 0.000487151
Sequoiadendron giganteum chr1 2 CH_sgi_560 3 5 0.00000035594
Theobroma cacao Chromosome_9 2 CH_tca_436 2 2 0.000732386

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001