Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.delta-12/delta-15 fatty acid desaturase (FAD2/3/6-8)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_302 | 2 | 2 | 0.000827917 |
| Capsicum annuum | PGAv.1.6.scaffold575 | 1 | CH_can_1 | 13 | 16 | 2.05134e-37 |
| Daucus carota | DCARv2_Chr8 | 1 | CH_dca_203 | 3 | 3 | 0.0000247723 |
| Daucus carota | DCARv2_Chr5 | 1 | CH_dca_204 | 3 | 3 | 0.0000247723 |
| Daucus carota | DCARv2_Chr4 | 1 | CH_dca_24 | 6 | 7 | 0.0000000000000986464 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 1 | CH_eca_214 | 3 | 3 | 0.00000611317 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 1 | CH_eca_85 | 4 | 4 | 0.0000000028804 |
| Helianthus annuus | HanXRQChr13 | 1 | CH_han_388 | 3 | 3 | 0.0000174044 |
| Helianthus annuus | HanXRQChr06 | 1 | CH_han_70 | 6 | 9 | 0.000000000000378077 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 1 | CH_lsa_21 | 8 | 10 | 1.8644e-19 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 1 | CH_lsa_64 | 6 | 10 | 0.00000000000187348 |
| Magnolia biondii | Chr03 | 1 | CH_mbi_679 | 2 | 3 | 0.00087414 |
| Malus domestica | Chr11 | 1 | CH_mdo_296 | 3 | 4 | 0.00000314013 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_474 | 2 | 2 | 0.000915631 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_127 | 3 | 3 | 0.00000035144 |
| Petunia axillaris | Peaxi162Scf00062 | 1 | CH_pax_53 | 4 | 6 | 0.00000000329001 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_250 | 3 | 4 | 0.00000440907 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_504 | 3 | 4 | 0.0000000569549 |
| Solanum lycopersicum | SL4.0ch12 | 1 | CH_sly_187 | 4 | 11 | 0.000000611067 |
| Solanum lycopersicum | SL4.0ch12 | 1 | CH_sly_70 | 5 | 6 | 0.00000000000457503 |
| Solanum pennellii | Spenn-ch12 | 1 | CH_spe_170 | 4 | 14 | 0.000000479842 |
| Solanum pennellii | Spenn-ch12 | 1 | CH_spe_78 | 4 | 4 | 0.000000000480494 |
| Solanum tuberosum | ST4.03ch12 | 1 | CH_stu_232 | 4 | 10 | 0.000000898606 |
| Solanum tuberosum | ST4.03ch12 | 1 | CH_stu_409 | 3 | 5 | 0.0000796613 |
| Solanum tuberosum | ST4.03ch12 | 1 | CH_stu_5 | 11 | 13 | 9.48353e-31 |
| Trochodendron aralioides | group18 | 1 | CH_tar_208 | 3 | 4 | 0.0000121072 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_302 | 2 | 2 | 0.000827917 |
| Capsicum annuum | PGAv.1.6.scaffold575 | 2 | CH_can_1 | 13 | 16 | 2.05134e-37 |
| Daucus carota | DCARv2_Chr8 | 2 | CH_dca_203 | 3 | 3 | 0.0000247723 |
| Daucus carota | DCARv2_Chr5 | 2 | CH_dca_204 | 3 | 3 | 0.0000247723 |
| Daucus carota | DCARv2_Chr4 | 2 | CH_dca_24 | 6 | 7 | 0.0000000000000986464 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 2 | CH_eca_214 | 3 | 3 | 0.00000611317 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 2 | CH_eca_85 | 4 | 4 | 0.0000000028804 |
| Helianthus annuus | HanXRQChr13 | 2 | CH_han_388 | 3 | 3 | 0.0000174044 |
| Helianthus annuus | HanXRQChr06 | 2 | CH_han_70 | 6 | 9 | 0.000000000000378077 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 2 | CH_lsa_21 | 8 | 10 | 1.8644e-19 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 2 | CH_lsa_64 | 6 | 10 | 0.00000000000187348 |
| Magnolia biondii | Chr03 | 2 | CH_mbi_679 | 2 | 3 | 0.00087414 |
| Malus domestica | Chr11 | 2 | CH_mdo_296 | 3 | 4 | 0.00000314013 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_474 | 2 | 2 | 0.000915631 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_127 | 3 | 3 | 0.00000035144 |
| Petunia axillaris | Peaxi162Scf00062 | 2 | CH_pax_53 | 4 | 6 | 0.00000000329001 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_250 | 3 | 4 | 0.00000440907 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_504 | 3 | 4 | 0.0000000569549 |
| Solanum lycopersicum | SL4.0ch12 | 2 | CH_sly_187 | 4 | 11 | 0.000000611067 |
| Solanum lycopersicum | SL4.0ch12 | 2 | CH_sly_70 | 5 | 6 | 0.00000000000457503 |
| Solanum pennellii | Spenn-ch12 | 2 | CH_spe_170 | 4 | 14 | 0.000000479842 |
| Solanum pennellii | Spenn-ch12 | 2 | CH_spe_78 | 4 | 4 | 0.000000000480494 |
| Solanum tuberosum | ST4.03ch12 | 2 | CH_stu_232 | 4 | 10 | 0.000000898606 |
| Solanum tuberosum | ST4.03ch12 | 2 | CH_stu_409 | 3 | 5 | 0.0000796613 |
| Solanum tuberosum | ST4.03ch12 | 2 | CH_stu_5 | 11 | 13 | 9.48353e-31 |
| Trochodendron aralioides | group18 | 2 | CH_tar_208 | 3 | 4 | 0.0000121072 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |