Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.delta-9 stearoyl-ACP desaturase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group8 | 1 | CH_ach_36 | 3 | 3 | 0.000000154921 |
| Arabidopsis lyrata | scaffold_6 | 1 | CH_aly_457 | 2 | 2 | 0.000990066 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 1 | CH_arhy_298 | 3 | 4 | 0.000001183 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 1 | CH_arhy_321 | 3 | 5 | 0.00000295716 |
| Amborella trichopoda | AmTr_v1.0_scaffold00001 | 1 | CH_atr_110 | 3 | 4 | 0.000000757232 |
| Brassica rapa | A10 | 1 | CH_bra_362 | 2 | 2 | 0.00064397 |
| Camellia sinensis var. sinensis | Chr9 | 1 | CH_camsi_59 | 5 | 6 | 0.000000000000025069 |
| Cannabis sativa | NC_044378.1 | 1 | CH_cansat_137 | 3 | 3 | 0.000000543303 |
| Cannabis sativa | NC_044370.1 | 1 | CH_cansat_193 | 3 | 8 | 0.0000303975 |
| Corylus avellana | 9 | 1 | CH_cav_16 | 7 | 19 | 6.37108e-16 |
| Carpinus fangiana | Cfa03 | 1 | CH_cfa_14 | 8 | 12 | 1.10313e-21 |
| Cardamine hirsuta | Chr6 | 1 | CH_chi_428 | 2 | 2 | 0.000691204 |
| Carya illinoinensis | Chr01 | 1 | CH_cil_233 | 3 | 3 | 0.000000322727 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2187 | 1 | CH_cqu_44 | 5 | 5 | 0.0000000000000299438 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 1 | CH_cqu_63 | 5 | 13 | 0.0000000000384878 |
| Davidia involucrata | GWHABJS00000016 | 1 | CH_din_34 | 5 | 10 | 0.000000000000661971 |
| Eucalyptus grandis | Chr08 | 1 | CH_egr_19 | 11 | 13 | 6.26988e-33 |
| Gossypium hirsutum | A10 | 1 | CH_ghi_323 | 3 | 3 | 0.00000103632 |
| Gossypium hirsutum | D10 | 1 | CH_ghi_373 | 3 | 4 | 0.00000414456 |
| Gossypium raimondii | Chr11 | 1 | CH_gra_194 | 3 | 5 | 0.0000036204 |
| Hydrangea macrophylla | Hma1.2p1_0108F.1 | 1 | CH_hma_284 | 2 | 2 | 0.000111086 |
| Lupinus albus | Lalb_Chr11 | 1 | CH_lal_420 | 2 | 2 | 0.000787236 |
| Lonicera japonica | GWHAAZE00000006 | 1 | CH_lonja_81 | 6 | 26 | 0.000000000000334582 |
| Medicago truncatula | chr3 | 1 | CH_mtr_49 | 7 | 27 | 4.03209e-17 |
| Nicotiana tabacum | Nitab4.5_0000270 | 1 | CH_nta_151 | 2 | 2 | 0.000329182 |
| Prunus persica | Pp06 | 1 | CH_ppe_468 | 2 | 2 | 0.000447577 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_549 | 2 | 2 | 0.000867002 |
| Quercus lobata | 10 | 1 | CH_qlo_82 | 6 | 7 | 1.21346e-17 |
| Rhododendron simsii | chr09 | 1 | CH_rsi_54 | 5 | 5 | 0.0000000000000163901 |
| Salix brachista | GWHAAZH00000010 | 1 | CH_sbr_46 | 4 | 4 | 0.0000000000112607 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_278 | 4 | 4 | 0.0000000000121398 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_97 | 4 | 5 | 0.000000000382137 |
| Selaginella moellendorffii | scaffold_37 | 1 | CH_smo_9 | 6 | 6 | 2.74129e-16 |
| Solanum pennellii | Spenn-ch06 | 1 | CH_spe_67 | 4 | 5 | 0.000000000166306 |
| Solanum tuberosum | ST4.03ch06 | 1 | CH_stu_60 | 5 | 6 | 0.000000000000143374 |
| Selenicereus undatus | Scaffold_33676 | 1 | CH_sun_288 | 2 | 2 | 0.000726639 |
| Trochodendron aralioides | group16 | 1 | CH_tar_174 | 3 | 4 | 0.00000121094 |
| Theobroma cacao | Chromosome_4 | 1 | CH_tca_84 | 4 | 4 | 0.000000000148511 |
| Utricularia gibba | unitig_8 | 1 | CH_ugi_24 | 3 | 3 | 0.0000000809468 |
| Vanilla planifolia | CM028152.1 | 1 | CH_vpl_381 | 3 | 23 | 0.000809351 |
| Vitis vinifera | chr5 | 1 | CH_vvi_39 | 7 | 16 | 5.75187e-17 |
| Actinidia chinensis | Lachesis_group8 | 2 | CH_ach_36 | 3 | 3 | 0.000000154921 |
| Arabidopsis lyrata | scaffold_6 | 2 | CH_aly_457 | 2 | 2 | 0.000990066 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 2 | CH_arhy_298 | 3 | 4 | 0.000001183 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 2 | CH_arhy_321 | 3 | 5 | 0.00000295716 |
| Amborella trichopoda | AmTr_v1.0_scaffold00001 | 2 | CH_atr_110 | 3 | 4 | 0.000000757232 |
| Brassica rapa | A10 | 2 | CH_bra_362 | 2 | 2 | 0.00064397 |
| Camellia sinensis var. sinensis | Chr9 | 2 | CH_camsi_59 | 5 | 6 | 0.000000000000025069 |
| Cannabis sativa | NC_044378.1 | 2 | CH_cansat_137 | 3 | 3 | 0.000000543303 |
| Cannabis sativa | NC_044370.1 | 2 | CH_cansat_193 | 3 | 8 | 0.0000303975 |
| Corylus avellana | 9 | 2 | CH_cav_16 | 7 | 19 | 6.37108e-16 |
| Carpinus fangiana | Cfa03 | 2 | CH_cfa_14 | 8 | 12 | 1.10313e-21 |
| Cardamine hirsuta | Chr6 | 2 | CH_chi_428 | 2 | 2 | 0.000691204 |
| Carya illinoinensis | Chr01 | 2 | CH_cil_233 | 3 | 3 | 0.000000322727 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2187 | 2 | CH_cqu_44 | 5 | 5 | 0.0000000000000299438 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 2 | CH_cqu_63 | 5 | 13 | 0.0000000000384878 |
| Davidia involucrata | GWHABJS00000016 | 2 | CH_din_34 | 5 | 10 | 0.000000000000661971 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_19 | 11 | 13 | 6.26988e-33 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_546 | 3 | 3 | 0.00000287747 |
| Gossypium hirsutum | A10 | 2 | CH_ghi_323 | 3 | 3 | 0.00000103632 |
| Gossypium hirsutum | D10 | 2 | CH_ghi_373 | 3 | 4 | 0.00000414456 |
| Gossypium raimondii | Chr11 | 2 | CH_gra_194 | 3 | 5 | 0.0000036204 |
| Hydrangea macrophylla | Hma1.2p1_0108F.1 | 2 | CH_hma_284 | 2 | 2 | 0.000111086 |
| Lupinus albus | Lalb_Chr11 | 2 | CH_lal_420 | 2 | 2 | 0.000787236 |
| Lonicera japonica | GWHAAZE00000006 | 2 | CH_lonja_81 | 6 | 26 | 0.000000000000334582 |
| Nicotiana tabacum | Nitab4.5_0000270 | 2 | CH_nta_151 | 2 | 2 | 0.000329182 |
| Prunus persica | Pp06 | 2 | CH_ppe_468 | 2 | 2 | 0.000447577 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_549 | 2 | 2 | 0.000867002 |
| Quercus lobata | 10 | 2 | CH_qlo_82 | 6 | 7 | 1.21346e-17 |
| Rhododendron simsii | chr09 | 2 | CH_rsi_54 | 5 | 5 | 0.0000000000000163901 |
| Salix brachista | GWHAAZH00000010 | 2 | CH_sbr_46 | 4 | 4 | 0.0000000000112607 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_278 | 4 | 4 | 0.0000000000121398 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_97 | 4 | 5 | 0.000000000382137 |
| Selaginella moellendorffii | scaffold_37 | 2 | CH_smo_9 | 6 | 6 | 2.74129e-16 |
| Solanum pennellii | Spenn-ch06 | 2 | CH_spe_67 | 4 | 5 | 0.000000000166306 |
| Solanum tuberosum | ST4.03ch06 | 2 | CH_stu_60 | 5 | 6 | 0.000000000000143374 |
| Selenicereus undatus | Scaffold_33676 | 2 | CH_sun_288 | 2 | 2 | 0.000726639 |
| Trochodendron aralioides | group16 | 2 | CH_tar_174 | 3 | 4 | 0.00000121094 |
| Theobroma cacao | Chromosome_4 | 2 | CH_tca_84 | 4 | 4 | 0.000000000148511 |
| Utricularia gibba | unitig_8 | 2 | CH_ugi_24 | 3 | 3 | 0.0000000809468 |
| Vanilla planifolia | CM028152.1 | 2 | CH_vpl_381 | 3 | 23 | 0.000809351 |
| Vitis vinifera | chr5 | 2 | CH_vvi_39 | 7 | 16 | 5.75187e-17 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |