Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.very long chain fatty acid elongation.catalytic protein (CER2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 9 1 CH_cav_357 2 2 0.000230008
Chenopodium quinoa C_Quinoa_Scaffold_1566 1 CH_cqu_550 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_3876 1 CH_cqu_551 2 2 0.000710732
Capsella rubella scaffold_3 1 CH_cru_369 2 2 0.000438693
Fragaria vesca Fvb5 1 CH_fve_346 2 2 0.00017673
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_232 3 5 0.00000138682
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_233 3 5 0.00000138682
Pisum sativum chr5LG3 1 CH_psa_287 2 2 0.00015649
Papaver somniferum NC_039364.1 1 CH_pso_582 2 2 0.000337849
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_74 6 26 0.0000000000000145912
Rhododendron simsii chr02 1 CH_rsi_437 2 2 0.000193592
Schrenkiella parvula ch3-2 1 CH_spa_256 2 2 0.000472404
Corylus avellana 9 2 CH_cav_357 2 2 0.000230008
Chenopodium quinoa C_Quinoa_Scaffold_1566 2 CH_cqu_550 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_3876 2 CH_cqu_551 2 2 0.000710732
Capsella rubella scaffold_3 2 CH_cru_369 2 2 0.000438693
Eucalyptus grandis Chr06 2 CH_egr_779 2 3 0.000175582
Fragaria vesca Fvb5 2 CH_fve_346 2 2 0.00017673
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_232 3 5 0.00000138682
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_233 3 5 0.00000138682
Pisum sativum chr5LG3 2 CH_psa_287 2 2 0.00015649
Papaver somniferum NC_039364.1 2 CH_pso_582 2 2 0.000337849
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_74 6 26 0.0000000000000145912
Rhododendron simsii chr02 2 CH_rsi_437 2 2 0.000193592
Schrenkiella parvula ch3-2 2 CH_spa_256 2 2 0.000472404

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001