Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.condensing enzyme activities.3-ketoacyl-CoA synthase (KCS)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 1 | CH_aag_192 | 2 | 2 | 0.000802568 |
| Aethionema arabicum | LG-8 | 1 | CH_aar_171 | 3 | 4 | 0.000101006 |
| Acer truncatum | chr4 | 1 | CH_acertr_3 | 12 | 13 | 8.14343e-31 |
| Acer truncatum | chr4 | 1 | CH_acertr_450 | 5 | 56 | 0.000254241 |
| Amborella trichopoda | AmTr_v1.0_scaffold00129 | 1 | CH_atr_41 | 5 | 6 | 0.0000000000277779 |
| Cicer arietinum L. | Ca_LG3_v3 | 1 | CH_car_100 | 3 | 3 | 0.00000617891 |
| Coffea canephora | chr3 | 1 | CH_ccan_79 | 4 | 40 | 0.000000126618 |
| Citrus clementina | scaffold_9 | 1 | CH_ccl_56 | 5 | 5 | 0.00000000000526655 |
| Carpinus fangiana | Cfa08 | 1 | CH_cfa_164 | 3 | 3 | 0.0000070208 |
| Cardamine hirsuta | Chr7 | 1 | CH_chi_185 | 3 | 3 | 0.0000110367 |
| Carya illinoinensis | Chr13 | 1 | CH_cil_185 | 4 | 5 | 0.0000000224804 |
| Carya illinoinensis | Chr03 | 1 | CH_cil_186 | 4 | 4 | 0.0000000224804 |
| Cucumis melo | chr06 | 1 | CH_cme_133 | 3 | 4 | 0.0000121459 |
| Corchorus olitorius | AWUE01015392.1 | 1 | CH_col_110 | 2 | 2 | 0.000876296 |
| Carica papaya | supercontig_1 | 1 | CH_cpa_102 | 3 | 3 | 0.00000298254 |
| Carica papaya | supercontig_58 | 1 | CH_cpa_117 | 3 | 4 | 0.0000119257 |
| Cucumis sativus L. | chr3 | 1 | CH_csa_149 | 3 | 3 | 0.00000380481 |
| Daucus carota | DCARv2_Chr9 | 1 | CH_dca_39 | 5 | 5 | 0.0000000000100196 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 1 | CH_eca_223 | 3 | 3 | 0.0000110363 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 1 | CH_eca_224 | 3 | 3 | 0.0000110363 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 1 | CH_eca_51 | 5 | 6 | 0.0000000000216585 |
| Eucalyptus grandis | Chr08 | 1 | CH_egr_124 | 7 | 9 | 3.94189e-17 |
| Erythranthe guttata | scaffold_7 | 1 | CH_egut_54 | 5 | 5 | 0.00000000000245209 |
| Gossypium hirsutum | A10 | 1 | CH_ghi_426 | 3 | 3 | 0.0000222718 |
| Gossypium raimondii | Chr02 | 1 | CH_gra_209 | 3 | 3 | 0.0000112093 |
| Helianthus annuus | HanXRQChr09 | 1 | CH_han_391 | 3 | 3 | 0.0000204709 |
| Lonicera japonica | GWHAAZE00000003 | 1 | CH_lonja_303 | 3 | 3 | 0.0000123738 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_220 | 4 | 8 | 0.000000675932 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 1 | CH_lsa_484 | 3 | 7 | 0.000505779 |
| Magnolia biondii | Chr07 | 1 | CH_mbi_541 | 3 | 11 | 0.000326237 |
| Malus domestica | Chr07 | 1 | CH_mdo_251 | 4 | 9 | 0.00000084159 |
| Malus domestica | Chr01 | 1 | CH_mdo_587 | 3 | 6 | 0.000235064 |
| Manihot esculenta | Chromosome02 | 1 | CH_mes_89 | 5 | 6 | 0.0000000000332287 |
| Marchantia polymorpha | scaffold_55 | 1 | CH_mpo_128 | 2 | 3 | 0.000993889 |
| Medicago truncatula | chr4 | 1 | CH_mtr_486 | 3 | 4 | 0.0000331682 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_247 | 3 | 3 | 0.0000128184 |
| Nicotiana tabacum | Nitab4.5_0000187 | 1 | CH_nta_46 | 3 | 3 | 0.000000632139 |
| Prunus persica | Pp02 | 1 | CH_ppe_267 | 3 | 3 | 0.0000111018 |
| Papaver somniferum | NC_039365.1 | 1 | CH_pso_167 | 6 | 36 | 0.00000000725881 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_190 | 5 | 15 | 0.0000000200683 |
| Papaver somniferum | NC_039361.1 | 1 | CH_pso_398 | 4 | 17 | 0.000027655 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_28 | 8 | 9 | 6.42663e-20 |
| Populus trichocarpa | Chr13 | 1 | CH_ptr_469 | 3 | 6 | 0.000496154 |
| Quercus lobata | 8 | 1 | CH_qlo_71 | 8 | 13 | 8.78494e-19 |
| Rhododendron simsii | chr01 | 1 | CH_rsi_86 | 5 | 6 | 0.0000000000262488 |
| Salix brachista | GWHAAZH00000010 | 1 | CH_sbr_128 | 4 | 8 | 0.000000663264 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_276 | 3 | 4 | 0.0000318184 |
| Schrenkiella parvula | ch3-5 | 1 | CH_spa_246 | 3 | 7 | 0.000431877 |
| Solanum tuberosum | ST4.03ch06 | 1 | CH_stu_124 | 4 | 4 | 0.00000000357523 |
| Trochodendron aralioides | group2 | 1 | CH_tar_212 | 3 | 3 | 0.0000140576 |
| Trochodendron aralioides | group16 | 1 | CH_tar_30 | 6 | 10 | 0.000000000000846894 |
| Theobroma cacao | Chromosome_4 | 1 | CH_tca_37 | 6 | 8 | 0.0000000000000246327 |
| Tarenaya hassleriana | NW_010966177.1 | 1 | CH_tha_40 | 4 | 4 | 0.0000000179427 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 1 | CH_tpr_172 | 3 | 3 | 0.0000070139 |
| Utricularia gibba | unitig_748 | 1 | CH_ugi_7 | 7 | 11 | 0.0000000000000137062 |
| Anthoceros agrestis | Sc2ySwM_228 | 2 | CH_aag_192 | 2 | 2 | 0.000802568 |
| Aethionema arabicum | LG-8 | 2 | CH_aar_171 | 3 | 4 | 0.000101006 |
| Acer truncatum | chr4 | 2 | CH_acertr_3 | 12 | 13 | 8.14343e-31 |
| Acer truncatum | chr4 | 2 | CH_acertr_450 | 5 | 56 | 0.000254241 |
| Amborella trichopoda | AmTr_v1.0_scaffold00129 | 2 | CH_atr_41 | 5 | 6 | 0.0000000000277779 |
| Cicer arietinum L. | Ca_LG3_v3 | 2 | CH_car_100 | 3 | 3 | 0.00000617891 |
| Coffea canephora | chr3 | 2 | CH_ccan_79 | 4 | 40 | 0.000000126618 |
| Citrus clementina | scaffold_9 | 2 | CH_ccl_56 | 5 | 5 | 0.00000000000526655 |
| Carpinus fangiana | Cfa08 | 2 | CH_cfa_164 | 3 | 3 | 0.0000070208 |
| Cardamine hirsuta | Chr7 | 2 | CH_chi_185 | 3 | 3 | 0.0000110367 |
| Carya illinoinensis | Chr13 | 2 | CH_cil_185 | 4 | 5 | 0.0000000224804 |
| Carya illinoinensis | Chr03 | 2 | CH_cil_186 | 4 | 4 | 0.0000000224804 |
| Cucumis melo | chr06 | 2 | CH_cme_133 | 3 | 4 | 0.0000121459 |
| Corchorus olitorius | AWUE01015392.1 | 2 | CH_col_110 | 2 | 2 | 0.000876296 |
| Carica papaya | supercontig_1 | 2 | CH_cpa_102 | 3 | 3 | 0.00000298254 |
| Carica papaya | supercontig_58 | 2 | CH_cpa_117 | 3 | 4 | 0.0000119257 |
| Cucumis sativus L. | chr3 | 2 | CH_csa_149 | 3 | 3 | 0.00000380481 |
| Daucus carota | DCARv2_Chr9 | 2 | CH_dca_39 | 5 | 5 | 0.0000000000100196 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 2 | CH_eca_223 | 3 | 3 | 0.0000110363 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 2 | CH_eca_224 | 3 | 3 | 0.0000110363 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 2 | CH_eca_51 | 5 | 6 | 0.0000000000216585 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_124 | 7 | 9 | 3.94189e-17 |
| Erythranthe guttata | scaffold_7 | 2 | CH_egut_54 | 5 | 5 | 0.00000000000245209 |
| Gossypium hirsutum | A10 | 2 | CH_ghi_426 | 3 | 3 | 0.0000222718 |
| Gossypium raimondii | Chr02 | 2 | CH_gra_209 | 3 | 3 | 0.0000112093 |
| Helianthus annuus | HanXRQChr09 | 2 | CH_han_391 | 3 | 3 | 0.0000204709 |
| Lonicera japonica | GWHAAZE00000003 | 2 | CH_lonja_303 | 3 | 3 | 0.0000123738 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_220 | 4 | 8 | 0.000000675932 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 2 | CH_lsa_484 | 3 | 7 | 0.000505779 |
| Magnolia biondii | Chr07 | 2 | CH_mbi_541 | 3 | 11 | 0.000326237 |
| Malus domestica | Chr07 | 2 | CH_mdo_251 | 4 | 9 | 0.00000084159 |
| Malus domestica | Chr01 | 2 | CH_mdo_587 | 3 | 6 | 0.000235064 |
| Manihot esculenta | Chromosome02 | 2 | CH_mes_89 | 5 | 6 | 0.0000000000332287 |
| Marchantia polymorpha | scaffold_55 | 2 | CH_mpo_128 | 2 | 3 | 0.000993889 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_247 | 3 | 3 | 0.0000128184 |
| Nicotiana tabacum | Nitab4.5_0000187 | 2 | CH_nta_46 | 3 | 3 | 0.000000632139 |
| Prunus persica | Pp02 | 2 | CH_ppe_267 | 3 | 3 | 0.0000111018 |
| Papaver somniferum | NC_039365.1 | 2 | CH_pso_167 | 6 | 36 | 0.00000000725881 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_190 | 5 | 15 | 0.0000000200683 |
| Papaver somniferum | NC_039361.1 | 2 | CH_pso_398 | 4 | 17 | 0.000027655 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_28 | 8 | 9 | 6.42663e-20 |
| Populus trichocarpa | Chr13 | 2 | CH_ptr_469 | 3 | 6 | 0.000496154 |
| Quercus lobata | 8 | 2 | CH_qlo_71 | 8 | 13 | 8.78494e-19 |
| Rhododendron simsii | chr01 | 2 | CH_rsi_86 | 5 | 6 | 0.0000000000262488 |
| Salix brachista | GWHAAZH00000010 | 2 | CH_sbr_128 | 4 | 8 | 0.000000663264 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_276 | 3 | 4 | 0.0000318184 |
| Schrenkiella parvula | ch3-5 | 2 | CH_spa_246 | 3 | 7 | 0.000431877 |
| Solanum tuberosum | ST4.03ch06 | 2 | CH_stu_124 | 4 | 4 | 0.00000000357523 |
| Trochodendron aralioides | group2 | 2 | CH_tar_212 | 3 | 3 | 0.0000140576 |
| Trochodendron aralioides | group16 | 2 | CH_tar_30 | 6 | 10 | 0.000000000000846894 |
| Theobroma cacao | Chromosome_4 | 2 | CH_tca_37 | 6 | 8 | 0.0000000000000246327 |
| Tarenaya hassleriana | NW_010966177.1 | 2 | CH_tha_40 | 4 | 4 | 0.0000000179427 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 2 | CH_tpr_172 | 3 | 3 | 0.0000070139 |
| Utricularia gibba | unitig_748 | 2 | CH_ugi_7 | 7 | 11 | 0.0000000000000137062 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |