Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.3-ketoacyl-CoA reductase (KCR)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 1 CH_amhyb_43 3 4 0.000000170045
Aquilegia oxysepala CHR05 1 CH_aox_337 2 2 0.000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 1 CH_arhy_263 3 4 0.000000451706
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 1 CH_arhy_290 3 5 0.00000112917
Amborella trichopoda AmTr_v1.0_scaffold00049 1 CH_atr_77 3 4 0.000000037865
Beta vulgaris Scaffold_0002 1 CH_bvu_289 2 5 0.000827815
Camellia sinensis var. sinensis Chr10 1 CH_camsi_655 2 2 0.000137564
Cannabis sativa NC_044373.1 1 CH_cansat_57 4 6 0.0000000000127413
Corylus avellana 9 1 CH_cav_480 2 2 0.000766695
Citrus clementina scaffold_4 1 CH_ccl_117 3 3 0.0000000100941
Carpinus fangiana Cfa03 1 CH_cfa_21 5 5 0.00000000000000148078
Carya illinoinensis Chr14 1 CH_cil_207 3 3 0.0000000576299
Chenopodium quinoa C_Quinoa_Scaffold_4119 1 CH_cqu_211 3 7 0.00000117841
Chenopodium quinoa C_Quinoa_Scaffold_1214 1 CH_cqu_495 2 2 0.000473821
Davidia involucrata GWHABJS00000008 1 CH_din_501 2 2 0.000750188
Davidia involucrata GWHABJS00000018 1 CH_din_502 2 2 0.000750188
Durio zibethinus NW_019168048.1 1 CH_dzi_115 3 5 0.000000644383
Durio zibethinus NW_019167971.1 1 CH_dzi_359 2 2 0.000695233
Eucalyptus grandis Chr08 1 CH_egr_33 9 12 4.29641e-28
Fragaria x ananassa Fvb4-1 1 CH_fan_20 6 17 0.00000000000000746801
Fragaria x ananassa Fvb4-3 1 CH_fan_9 6 8 1.69106e-17
Fragaria vesca Fvb4 1 CH_fve_8 8 12 3.84118e-25
Glycine max Gm11 1 CH_gma_445 2 2 0.000227734
Glycine max Gm18 1 CH_gma_446 2 2 0.000227734
Gossypium raimondii Chr05 1 CH_gra_459 2 3 0.000964932
Hydrangea macrophylla Hma1.2p1_0079F.1 1 CH_hma_395 2 2 0.000666519
Malus domestica Chr16 1 CH_mdo_216 3 4 0.000000172554
Manihot esculenta Chromosome12 1 CH_mes_420 2 2 0.000366379
Oryza sativa ssp. japonica chr06 1 CH_osa_14 6 9 6.52238e-17
Punica granatum NC_045132.1 1 CH_pgr_93 3 3 0.0000000337834
Prunus persica Pp01 1 CH_ppe_77 4 4 0.00000000000124543
Populus trichocarpa Chr10 1 CH_ptr_166 3 3 0.0000000501143
Populus trichocarpa Chr08 1 CH_ptr_506 2 2 0.000578001
Phaseolus vulgaris Chr01 1 CH_pvu_357 2 2 0.000220418
Quercus lobata 3 1 CH_qlo_671 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_12 10 18 7.89122e-32
Rhododendron simsii chr12 1 CH_rsi_170 3 3 0.0000000624652
Salvia bowleyana GWHASIU00000004 1 CH_sbo_416 2 2 0.00045498
Salix brachista GWHAAZH00000010 1 CH_sbr_225 2 2 0.000063014
Simmondsia chinensis GWHAASQ00000014 1 CH_sci_223 2 2 0.000255428
Selenicereus undatus Scaffold_19641 1 CH_sun_200 2 2 0.000217992
Trochodendron aralioides group8 1 CH_tar_154 3 4 0.000000432498
Theobroma cacao Chromosome_2 1 CH_tca_323 2 3 0.000219708
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_32 5 5 0.0000000000000313241
Vigna mungo CM024070.1 1 CH_vmu_292 2 2 0.000193842
Vanilla planifolia CM028152.1 1 CH_vpl_324 2 2 0.000443328
Vitis vinifera chr1 1 CH_vvi_75 4 6 0.0000000000198038
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 2 CH_amhyb_43 3 4 0.000000170045
Aquilegia oxysepala CHR05 2 CH_aox_337 2 2 0.000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 2 CH_arhy_263 3 4 0.000000451706
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 2 CH_arhy_290 3 5 0.00000112917
Amborella trichopoda AmTr_v1.0_scaffold00049 2 CH_atr_77 3 4 0.000000037865
Beta vulgaris Scaffold_0002 2 CH_bvu_289 2 5 0.000827815
Camellia sinensis var. sinensis Chr10 2 CH_camsi_655 2 2 0.000137564
Cannabis sativa NC_044373.1 2 CH_cansat_57 4 6 0.0000000000127413
Corylus avellana 9 2 CH_cav_480 2 2 0.000766695
Citrus clementina scaffold_4 2 CH_ccl_117 3 3 0.0000000100941
Carpinus fangiana Cfa03 2 CH_cfa_21 5 5 0.00000000000000148078
Carya illinoinensis Chr14 2 CH_cil_207 3 3 0.0000000576299
Chenopodium quinoa C_Quinoa_Scaffold_4119 2 CH_cqu_211 3 7 0.00000117841
Chenopodium quinoa C_Quinoa_Scaffold_1214 2 CH_cqu_495 2 2 0.000473821
Davidia involucrata GWHABJS00000008 2 CH_din_501 2 2 0.000750188
Davidia involucrata GWHABJS00000018 2 CH_din_502 2 2 0.000750188
Durio zibethinus NW_019168048.1 2 CH_dzi_115 3 5 0.000000644383
Durio zibethinus NW_019167971.1 2 CH_dzi_359 2 2 0.000695233
Eucalyptus grandis Chr08 2 CH_egr_33 9 12 4.29641e-28
Fragaria x ananassa Fvb4-1 2 CH_fan_20 6 17 0.00000000000000746801
Fragaria x ananassa Fvb4-3 2 CH_fan_9 6 8 1.69106e-17
Fragaria vesca Fvb4 2 CH_fve_8 8 12 3.84118e-25
Gossypium hirsutum A03 2 CH_ghi_829 2 2 0.000747644
Gossypium hirsutum D02 2 CH_ghi_830 2 2 0.000747644
Glycine max Gm11 2 CH_gma_445 2 2 0.000227734
Glycine max Gm18 2 CH_gma_446 2 2 0.000227734
Gossypium raimondii Chr05 2 CH_gra_459 2 3 0.000964932
Hydrangea macrophylla Hma1.2p1_0079F.1 2 CH_hma_395 2 2 0.000666519
Malus domestica Chr16 2 CH_mdo_216 3 4 0.000000172554
Manihot esculenta Chromosome12 2 CH_mes_420 2 2 0.000366379
Oryza sativa ssp. japonica chr06 2 CH_osa_14 6 9 6.52238e-17
Punica granatum NC_045132.1 2 CH_pgr_93 3 3 0.0000000337834
Prunus persica Pp01 2 CH_ppe_77 4 4 0.00000000000124543
Populus trichocarpa Chr10 2 CH_ptr_166 3 3 0.0000000501143
Populus trichocarpa Chr08 2 CH_ptr_506 2 2 0.000578001
Phaseolus vulgaris Chr01 2 CH_pvu_357 2 2 0.000220418
Quercus lobata 3 2 CH_qlo_671 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_12 10 18 7.89122e-32
Rhododendron simsii chr12 2 CH_rsi_170 3 3 0.0000000624652
Salvia bowleyana GWHASIU00000004 2 CH_sbo_416 2 2 0.00045498
Salix brachista GWHAAZH00000010 2 CH_sbr_225 2 2 0.000063014
Simmondsia chinensis GWHAASQ00000014 2 CH_sci_223 2 2 0.000255428
Selenicereus undatus Scaffold_19641 2 CH_sun_200 2 2 0.000217992
Trochodendron aralioides group8 2 CH_tar_154 3 4 0.000000432498
Theobroma cacao Chromosome_2 2 CH_tca_323 2 3 0.000219708
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_32 5 5 0.0000000000000313241
Vigna mungo CM024070.1 2 CH_vmu_292 2 2 0.000193842
Vanilla planifolia CM028152.1 2 CH_vpl_324 2 2 0.000443328
Vitis vinifera chr1 2 CH_vvi_75 4 6 0.0000000000198038

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001