Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.amino acid racemization.PLP-independent amino acid racemase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 1 CH_acertr_91 3 3 0.000000007455
Actinidia chinensis Lachesis_group19 1 CH_ach_97 2 2 0.0000543213
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 1 CH_arhy_754 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 1 CH_arhy_755 2 2 0.000838273
Arabidopsis thaliana Chr4 1 CH_ath_283 2 2 0.0000859476
Brassica carinata ChrB05 1 CH_bca_1108 2 2 0.000769551
Brassica rapa A04 1 CH_bra_85 3 3 0.0000000967649
Camellia sinensis var. sinensis Chr11 1 CH_camsi_97 4 5 0.00000000000723146
Citrus clementina scaffold_3 1 CH_ccl_459 2 2 0.000492187
Carpinus fangiana Cfa02 1 CH_cfa_254 2 2 0.0000757346
Cardamine hirsuta Chr8 1 CH_chi_27 5 5 0.00000000000000102737
Cucumis melo chr01 1 CH_cme_223 2 3 0.000200127
Carica papaya supercontig_52 1 CH_cpa_243 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_3080 1 CH_cqu_386 2 2 0.000142146
Cucumis sativus L. chr7 1 CH_csa_122 4 47 0.000000310734
Durio zibethinus NW_019167938.1 1 CH_dzi_241 2 2 0.000139047
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_290 2 2 0.0000448722
Eucalyptus grandis Chr03 1 CH_egr_7 13 15 2.58368e-43
Erythranthe guttata scaffold_4 1 CH_egut_321 2 2 0.0000728147
Eutrema salsugineum scaffold_3 1 CH_esa_263 2 2 0.00022845
Fragaria x ananassa Fvb2-2 1 CH_fan_353 2 2 0.0000555108
Fragaria vesca Fvb2 1 CH_fve_100 3 3 0.00000000520576
Glycine max Gm02 1 CH_gma_585 2 3 0.000683172
Gossypium raimondii Chr04 1 CH_gra_286 2 3 0.000160828
Helianthus annuus HanXRQChr01 1 CH_han_529 2 2 0.000115929
Hydrangea macrophylla Hma1.2p1_0628F.1 1 CH_hma_304 2 2 0.000111086
Lupinus albus Lalb_Chr06 1 CH_lal_217 2 2 0.0000524824
Lotus japonicus chr5 1 CH_lja_99 3 4 0.0000000306801
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_161 3 5 0.0000000396294
Malus domestica Chr03 1 CH_mdo_699 2 2 0.000568817
Malus domestica Chr11 1 CH_mdo_96 4 6 0.000000000036807
Manihot esculenta Chromosome05 1 CH_mes_167 3 3 0.0000000559323
Medicago truncatula chr1 1 CH_mtr_176 4 7 0.000000000509675
Medicago truncatula chr1 1 CH_mtr_344 3 4 0.000000567153
Nicotiana tabacum Nitab4.5_0001028 1 CH_nta_27 3 3 0.0000000180611
Punica granatum NC_045132.1 1 CH_pgr_233 2 2 0.0000750356
Prunus persica Pp08 1 CH_ppe_359 2 2 0.0000745962
Populus trichocarpa Chr10 1 CH_ptr_354 2 3 0.000173395
Phaseolus vulgaris Chr07 1 CH_pvu_123 3 3 0.0000000323906
Quercus lobata 12 1 CH_qlo_137 5 7 0.0000000000000235006
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_191 3 3 0.00000000238391
Sequoiadendron giganteum chr4 1 CH_sgi_1046 2 3 0.000146142
Schrenkiella parvula ch6-1 1 CH_spa_209 2 3 0.000236193
Solanum tuberosum ST4.03ch09 1 CH_stu_555 2 5 0.000512413
Trochodendron aralioides group2 1 CH_tar_281 2 2 0.0000600366
Theobroma cacao Chromosome_1 1 CH_tca_302 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_scaf_74 1 CH_tpr_62 3 3 0.00000000859546
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_89 3 3 0.0000000129529
Vigna mungo CM024071.1 1 CH_vmu_29 4 6 0.0000000000121397
Vitis vinifera chr7 1 CH_vvi_120 3 3 0.0000000086787
Acer truncatum chr5 2 CH_acertr_91 3 3 0.000000007455
Actinidia chinensis Lachesis_group19 2 CH_ach_97 2 2 0.0000543213
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 2 CH_arhy_754 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 2 CH_arhy_755 2 2 0.000838273
Arabidopsis thaliana Chr4 2 CH_ath_283 2 2 0.0000859476
Brassica carinata ChrB05 2 CH_bca_1108 2 2 0.000769551
Brassica rapa A04 2 CH_bra_85 3 3 0.0000000967649
Camellia sinensis var. sinensis Chr11 2 CH_camsi_97 4 5 0.00000000000723146
Citrus clementina scaffold_3 2 CH_ccl_459 2 2 0.000492187
Carpinus fangiana Cfa02 2 CH_cfa_254 2 2 0.0000757346
Cardamine hirsuta Chr8 2 CH_chi_27 5 5 0.00000000000000102737
Cucumis melo chr01 2 CH_cme_223 2 3 0.000200127
Carica papaya supercontig_52 2 CH_cpa_243 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_3080 2 CH_cqu_386 2 2 0.000142146
Cucumis sativus L. chr7 2 CH_csa_122 4 47 0.000000310734
Durio zibethinus NW_019167938.1 2 CH_dzi_241 2 2 0.000139047
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_290 2 2 0.0000448722
Eucalyptus grandis Chr03 2 CH_egr_7 13 15 2.58368e-43
Erythranthe guttata scaffold_4 2 CH_egut_321 2 2 0.0000728147
Eutrema salsugineum scaffold_3 2 CH_esa_263 2 2 0.00022845
Fragaria x ananassa Fvb2-2 2 CH_fan_353 2 2 0.0000555108
Fragaria vesca Fvb2 2 CH_fve_100 3 3 0.00000000520576
Gossypium hirsutum A08 2 CH_ghi_572 2 2 0.000160209
Gossypium hirsutum D08 2 CH_ghi_760 2 3 0.000480613
Glycine max Gm02 2 CH_gma_585 2 3 0.000683172
Gossypium raimondii Chr04 2 CH_gra_286 2 3 0.000160828
Helianthus annuus HanXRQChr01 2 CH_han_529 2 2 0.000115929
Hydrangea macrophylla Hma1.2p1_0628F.1 2 CH_hma_304 2 2 0.000111086
Lupinus albus Lalb_Chr06 2 CH_lal_217 2 2 0.0000524824
Lotus japonicus chr5 2 CH_lja_99 3 4 0.0000000306801
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_161 3 5 0.0000000396294
Malus domestica Chr03 2 CH_mdo_699 2 2 0.000568817
Malus domestica Chr11 2 CH_mdo_96 4 6 0.000000000036807
Manihot esculenta Chromosome05 2 CH_mes_167 3 3 0.0000000559323
Nicotiana tabacum Nitab4.5_0001028 2 CH_nta_27 3 3 0.0000000180611
Punica granatum NC_045132.1 2 CH_pgr_233 2 2 0.0000750356
Prunus persica Pp08 2 CH_ppe_359 2 2 0.0000745962
Populus trichocarpa Chr10 2 CH_ptr_354 2 3 0.000173395
Phaseolus vulgaris Chr07 2 CH_pvu_123 3 3 0.0000000323906
Quercus lobata 12 2 CH_qlo_137 5 7 0.0000000000000235006
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_191 3 3 0.00000000238391
Sequoiadendron giganteum chr4 2 CH_sgi_1046 2 3 0.000146142
Schrenkiella parvula ch6-1 2 CH_spa_209 2 3 0.000236193
Solanum tuberosum ST4.03ch09 2 CH_stu_555 2 5 0.000512413
Trochodendron aralioides group2 2 CH_tar_281 2 2 0.0000600366
Theobroma cacao Chromosome_1 2 CH_tca_302 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_scaf_74 2 CH_tpr_62 3 3 0.00000000859546
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_89 3 3 0.0000000129529
Vigna mungo CM024071.1 2 CH_vmu_29 4 6 0.0000000000121397
Vitis vinifera chr7 2 CH_vvi_120 3 3 0.0000000086787

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001