Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.aromatic amino acid.tyrosine.tyrosine aminotransferase (TAT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-7 1 CH_aar_270 2 2 0.000912326
Acer truncatum chr6 1 CH_acertr_126 3 3 0.00000007455
Actinidia chinensis Lachesis_group19 1 CH_ach_268 2 2 0.000814819
Arabidopsis lyrata scaffold_7 1 CH_aly_453 2 2 0.000990066
Arabidopsis lyrata scaffold_7 1 CH_aly_454 2 2 0.000990066
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 1 CH_amhyb_235 2 2 0.000505051
Aquilegia oxysepala CHR04 1 CH_aox_225 2 2 0.000240597
Arabidopsis thaliana Chr4 1 CH_ath_421 2 2 0.000802177
Arabidopsis thaliana Chr4 1 CH_ath_422 2 2 0.000802177
Brassica carinata ChrC01 1 CH_bca_113 4 4 0.000000000600018
Brassica napus C03 1 CH_bna_59 5 7 0.00000000000812796
Brassica oleracea C3 1 CH_bol_41 5 13 0.0000000000942638
Beta vulgaris Chr9_EL10_PGA_scaffold8 1 CH_bvu_272 2 2 0.00049675
Camellia sinensis var. sinensis Chr7 1 CH_camsi_879 2 2 0.000687821
Cannabis sativa NC_044379.1 1 CH_cansat_118 3 4 0.00000010348
Capsicum annuum PGAv.1.6.scaffold209 1 CH_can_208 3 5 0.00000859531
Corylus avellana 5 1 CH_cav_109 3 4 0.000000141073
Coffea canephora chr5 1 CH_ccan_290 2 9 0.000268306
Citrus clementina scaffold_2 1 CH_ccl_31 6 9 4.91509e-17
Carpinus fangiana Cfa06 1 CH_cfa_92 3 3 0.0000000344157
Carya illinoinensis Chr04 1 CH_cil_72 5 7 0.0000000000000139492
Carica papaya supercontig_83 1 CH_cpa_372 2 3 0.000855527
Chenopodium quinoa C_Quinoa_Scaffold_3416 1 CH_cqu_615 2 2 0.000995025
Capsella rubella scaffold_7 1 CH_cru_185 3 4 0.00000179597
Durio zibethinus NW_019167849.1 1 CH_dzi_38 4 5 0.00000000000746777
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_70 4 5 0.000000000284588
Eutrema salsugineum scaffold_1 1 CH_esa_115 3 3 0.00000248778
Eutrema salsugineum scaffold_15 1 CH_esa_67 4 7 0.0000000331242
Fragaria x ananassa Fvb6-4 1 CH_fan_625 2 2 0.000832663
Fragaria x ananassa Fvb6-2 1 CH_fan_626 2 2 0.000832663
Fragaria vesca Fvb6 1 CH_fve_345 2 2 0.00017673
Gossypium hirsutum D02 1 CH_ghi_285 3 4 0.000000359317
Glycine max Gm13 1 CH_gma_560 2 2 0.000569336
Gossypium raimondii Chr05 1 CH_gra_458 2 3 0.000964932
Lotus japonicus chr3 1 CH_lja_101 3 3 0.0000000306812
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_38 6 9 1.42393e-16
Malus domestica Chr17 1 CH_mdo_561 2 2 0.000227527
Oryza sativa ssp. japonica chr02 1 CH_osa_228 3 18 0.0000681919
Punica granatum NC_045130.1 1 CH_pgr_19 5 5 0.00000000000000142686
Physcomitrium patens Chr22 1 CH_ppa_92 2 2 0.0000612726
Prunus persica Pp03 1 CH_ppe_413 2 2 0.000223789
Populus trichocarpa Chr07 1 CH_ptr_189 3 3 0.00000028064
Populus trichocarpa Chr17 1 CH_ptr_55 5 5 0.00000000000000468856
Quercus lobata 8 1 CH_qlo_453 3 5 0.00000039979
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_244 3 4 0.0000000381412
Rhododendron simsii chr04 1 CH_rsi_494 2 2 0.000387184
Salvia bowleyana GWHASIU00000005 1 CH_sbo_37 5 5 0.00000000000000180002
Salix brachista GWHAAZH00000017 1 CH_sbr_414 2 2 0.000945209
Simmondsia chinensis GWHAASQ00000021 1 CH_sci_63 3 5 0.000000173977
Solanum lycopersicum SL4.0ch07 1 CH_sly_550 2 2 0.000880411
Schrenkiella parvula ch7-4 1 CH_spa_123 3 3 0.00000204576
Schrenkiella parvula ch4-2 1 CH_spa_192 3 8 0.000114388
Solanum pennellii Spenn-ch07 1 CH_spe_504 2 2 0.000667186
Theobroma cacao Chromosome_2 1 CH_tca_205 3 7 0.00000112617
Tripterygium wilfordii NC_052248.1 1 CH_twi_249 2 2 0.000334504
Vitis vinifera chr12 1 CH_vvi_97 4 8 0.000000000461998
Aethionema arabicum LG-7 2 CH_aar_270 2 2 0.000912326
Acer truncatum chr6 2 CH_acertr_126 3 3 0.00000007455
Actinidia chinensis Lachesis_group19 2 CH_ach_268 2 2 0.000814819
Arabidopsis lyrata scaffold_7 2 CH_aly_453 2 2 0.000990066
Arabidopsis lyrata scaffold_7 2 CH_aly_454 2 2 0.000990066
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 2 CH_amhyb_235 2 2 0.000505051
Aquilegia oxysepala CHR04 2 CH_aox_225 2 2 0.000240597
Arabidopsis thaliana Chr4 2 CH_ath_421 2 2 0.000802177
Arabidopsis thaliana Chr4 2 CH_ath_422 2 2 0.000802177
Brassica carinata ChrC01 2 CH_bca_113 4 4 0.000000000600018
Brassica oleracea C3 2 CH_bol_41 5 13 0.0000000000942638
Beta vulgaris Chr9_EL10_PGA_scaffold8 2 CH_bvu_272 2 2 0.00049675
Camellia sinensis var. sinensis Chr7 2 CH_camsi_879 2 2 0.000687821
Cannabis sativa NC_044379.1 2 CH_cansat_118 3 4 0.00000010348
Capsicum annuum PGAv.1.6.scaffold209 2 CH_can_208 3 5 0.00000859531
Corylus avellana 5 2 CH_cav_109 3 4 0.000000141073
Coffea canephora chr5 2 CH_ccan_290 2 9 0.000268306
Citrus clementina scaffold_2 2 CH_ccl_31 6 9 4.91509e-17
Carpinus fangiana Cfa06 2 CH_cfa_92 3 3 0.0000000344157
Carya illinoinensis Chr04 2 CH_cil_72 5 7 0.0000000000000139492
Carica papaya supercontig_83 2 CH_cpa_372 2 3 0.000855527
Chenopodium quinoa C_Quinoa_Scaffold_3416 2 CH_cqu_615 2 2 0.000995025
Capsella rubella scaffold_7 2 CH_cru_185 3 4 0.00000179597
Durio zibethinus NW_019167849.1 2 CH_dzi_38 4 5 0.00000000000746777
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_70 4 5 0.000000000284588
Eucalyptus grandis Chr01 2 CH_egr_314 4 12 0.00000000148809
Eutrema salsugineum scaffold_1 2 CH_esa_115 3 3 0.00000248778
Eutrema salsugineum scaffold_15 2 CH_esa_67 4 7 0.0000000331242
Fragaria x ananassa Fvb6-4 2 CH_fan_625 2 2 0.000832663
Fragaria x ananassa Fvb6-2 2 CH_fan_626 2 2 0.000832663
Fragaria vesca Fvb6 2 CH_fve_345 2 2 0.00017673
Gossypium hirsutum D02 2 CH_ghi_285 3 4 0.000000359317
Gossypium hirsutum A03 2 CH_ghi_899 2 2 0.000961256
Glycine max Gm13 2 CH_gma_560 2 2 0.000569336
Gossypium raimondii Chr05 2 CH_gra_458 2 3 0.000964932
Lotus japonicus chr3 2 CH_lja_101 3 3 0.0000000306812
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_38 6 9 1.42393e-16
Malus domestica Chr17 2 CH_mdo_561 2 2 0.000227527
Oryza sativa ssp. japonica chr02 2 CH_osa_228 3 18 0.0000681919
Punica granatum NC_045130.1 2 CH_pgr_19 5 5 0.00000000000000142686
Physcomitrium patens Chr22 2 CH_ppa_92 2 2 0.0000612726
Prunus persica Pp03 2 CH_ppe_413 2 2 0.000223789
Populus trichocarpa Chr07 2 CH_ptr_189 3 3 0.00000028064
Populus trichocarpa Chr17 2 CH_ptr_55 5 5 0.00000000000000468856
Quercus lobata 8 2 CH_qlo_453 3 5 0.00000039979
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_244 3 4 0.0000000381412
Rhododendron simsii chr04 2 CH_rsi_494 2 2 0.000387184
Salvia bowleyana GWHASIU00000005 2 CH_sbo_37 5 5 0.00000000000000180002
Salix brachista GWHAAZH00000017 2 CH_sbr_414 2 2 0.000945209
Simmondsia chinensis GWHAASQ00000021 2 CH_sci_63 3 5 0.000000173977
Solanum lycopersicum SL4.0ch07 2 CH_sly_550 2 2 0.000880411
Schrenkiella parvula ch7-4 2 CH_spa_123 3 3 0.00000204576
Schrenkiella parvula ch4-2 2 CH_spa_192 3 8 0.000114388
Solanum pennellii Spenn-ch07 2 CH_spe_504 2 2 0.000667186
Theobroma cacao Chromosome_2 2 CH_tca_205 3 7 0.00000112617
Tripterygium wilfordii NC_052248.1 2 CH_twi_249 2 2 0.000334504
Vitis vinifera chr12 2 CH_vvi_97 4 8 0.000000000461998

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001