Functional clusters
Information
- Type MapMan
- Description Amino acid metabolism.degradation.aromatic amino acid.aromatic amino acid decarboxylase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 1 | CH_aar_217 | 2 | 2 | 0.000273698 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 1 | CH_atr_220 | 3 | 12 | 0.000116431 |
| Brassica carinata | ChrB03 | 1 | CH_bca_269 | 3 | 3 | 0.000000196034 |
| Brassica carinata | ChrB07 | 1 | CH_bca_270 | 3 | 3 | 0.000000196034 |
| Brassica rapa | A07 | 1 | CH_bra_361 | 2 | 2 | 0.00064397 |
| Cannabis sativa | NC_044376.1 | 1 | CH_cansat_19 | 7 | 10 | 5.99947e-19 |
| Corylus avellana | 2 | 1 | CH_cav_50 | 4 | 6 | 0.000000000304183 |
| Citrus clementina | scaffold_7 | 1 | CH_ccl_220 | 3 | 4 | 0.00000666017 |
| Ceratophyllum demersum | 11 | 1 | CH_cde_56 | 3 | 4 | 0.00000449027 |
| Ceratophyllum demersum | 9 | 1 | CH_cde_57 | 3 | 4 | 0.00000449027 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_132 | 3 | 3 | 0.00000072273 |
| Carya illinoinensis | Chr09 | 1 | CH_cil_150 | 4 | 5 | 0.000000000450038 |
| Carya illinoinensis | Chr10 | 1 | CH_cil_267 | 3 | 4 | 0.00000193603 |
| Corchorus olitorius | AWUE01016374.1 | 1 | CH_col_91 | 2 | 2 | 0.000292099 |
| Capsella rubella | scaffold_3 | 1 | CH_cru_399 | 2 | 3 | 0.000657999 |
| Daucus carota | DCARv2_Chr3 | 1 | CH_dca_126 | 3 | 3 | 0.000000341687 |
| Durio zibethinus | NW_019167893.1 | 1 | CH_dzi_163 | 3 | 7 | 0.00000631313 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_240 | 3 | 10 | 0.0000218462 |
| Helianthus annuus | HanXRQChr17 | 1 | CH_han_252 | 3 | 3 | 0.000000268794 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_556 | 2 | 2 | 0.000359324 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_75 | 4 | 4 | 0.0000000000240575 |
| Olea europaea | chr21 | 1 | CH_oeu_261 | 2 | 2 | 0.000160137 |
| Physcomitrium patens | Chr04 | 1 | CH_ppa_24 | 3 | 5 | 0.0000000563133 |
| Prunus persica | Pp04 | 1 | CH_ppe_123 | 4 | 6 | 0.000000000653687 |
| Pisum sativum | chr3LG5 | 1 | CH_psa_298 | 2 | 2 | 0.00015649 |
| Papaver somniferum | NW_020624377.1 | 1 | CH_pso_105 | 5 | 7 | 0.00000000000815858 |
| Papaver somniferum | NC_039363.1 | 1 | CH_pso_334 | 3 | 3 | 0.00000377434 |
| Populus trichocarpa | Chr13 | 1 | CH_ptr_513 | 2 | 2 | 0.000578001 |
| Quercus lobata | 5 | 1 | CH_qlo_501 | 3 | 3 | 0.00000114355 |
| Quercus lobata | 5 | 1 | CH_qlo_530 | 4 | 23 | 0.00000260364 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_735 | 2 | 2 | 0.000398653 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_420 | 2 | 2 | 0.00045498 |
| Salix brachista | GWHAAZH00000013 | 1 | CH_sbr_371 | 2 | 5 | 0.00063008 |
| Simmondsia chinensis | GWHAASQ00000021 | 1 | CH_sci_76 | 5 | 70 | 0.000000594031 |
| Simmondsia chinensis | GWHAASQ00000005 | 1 | CH_sci_86 | 4 | 21 | 0.00000139149 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_526 | 3 | 3 | 0.000000124594 |
| Theobroma cacao | Chromosome_5 | 1 | CH_tca_172 | 3 | 3 | 0.000000281615 |
| Tripterygium wilfordii | NC_052244.1 | 1 | CH_twi_88 | 3 | 5 | 0.0000000466208 |
| Vitis vinifera | chr4 | 1 | CH_vvi_209 | 3 | 5 | 0.00000303662 |
| Aethionema arabicum | LG-8 | 2 | CH_aar_217 | 2 | 2 | 0.000273698 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 2 | CH_atr_220 | 3 | 12 | 0.000116431 |
| Brassica carinata | ChrB03 | 2 | CH_bca_269 | 3 | 3 | 0.000000196034 |
| Brassica carinata | ChrB07 | 2 | CH_bca_270 | 3 | 3 | 0.000000196034 |
| Brassica rapa | A07 | 2 | CH_bra_361 | 2 | 2 | 0.00064397 |
| Cannabis sativa | NC_044376.1 | 2 | CH_cansat_19 | 7 | 10 | 5.99947e-19 |
| Corylus avellana | 2 | 2 | CH_cav_50 | 4 | 6 | 0.000000000304183 |
| Citrus clementina | scaffold_7 | 2 | CH_ccl_220 | 3 | 4 | 0.00000666017 |
| Ceratophyllum demersum | 11 | 2 | CH_cde_56 | 3 | 4 | 0.00000449027 |
| Ceratophyllum demersum | 9 | 2 | CH_cde_57 | 3 | 4 | 0.00000449027 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_132 | 3 | 3 | 0.00000072273 |
| Carya illinoinensis | Chr09 | 2 | CH_cil_150 | 4 | 5 | 0.000000000450038 |
| Carya illinoinensis | Chr10 | 2 | CH_cil_267 | 3 | 4 | 0.00000193603 |
| Corchorus olitorius | AWUE01016374.1 | 2 | CH_col_91 | 2 | 2 | 0.000292099 |
| Capsella rubella | scaffold_3 | 2 | CH_cru_399 | 2 | 3 | 0.000657999 |
| Daucus carota | DCARv2_Chr3 | 2 | CH_dca_126 | 3 | 3 | 0.000000341687 |
| Durio zibethinus | NW_019167893.1 | 2 | CH_dzi_163 | 3 | 7 | 0.00000631313 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_587 | 3 | 6 | 0.00000862825 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_240 | 3 | 10 | 0.0000218462 |
| Helianthus annuus | HanXRQChr17 | 2 | CH_han_252 | 3 | 3 | 0.000000268794 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_556 | 2 | 2 | 0.000359324 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_75 | 4 | 4 | 0.0000000000240575 |
| Olea europaea | chr21 | 2 | CH_oeu_261 | 2 | 2 | 0.000160137 |
| Physcomitrium patens | Chr04 | 2 | CH_ppa_24 | 3 | 5 | 0.0000000563133 |
| Prunus persica | Pp04 | 2 | CH_ppe_123 | 4 | 6 | 0.000000000653687 |
| Pisum sativum | chr3LG5 | 2 | CH_psa_298 | 2 | 2 | 0.00015649 |
| Papaver somniferum | NW_020624377.1 | 2 | CH_pso_105 | 5 | 7 | 0.00000000000815858 |
| Papaver somniferum | NC_039363.1 | 2 | CH_pso_334 | 3 | 3 | 0.00000377434 |
| Populus trichocarpa | Chr13 | 2 | CH_ptr_513 | 2 | 2 | 0.000578001 |
| Quercus lobata | 5 | 2 | CH_qlo_501 | 3 | 3 | 0.00000114355 |
| Quercus lobata | 5 | 2 | CH_qlo_530 | 4 | 23 | 0.00000260364 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_735 | 2 | 2 | 0.000398653 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_420 | 2 | 2 | 0.00045498 |
| Salix brachista | GWHAAZH00000013 | 2 | CH_sbr_371 | 2 | 5 | 0.00063008 |
| Simmondsia chinensis | GWHAASQ00000021 | 2 | CH_sci_76 | 5 | 70 | 0.000000594031 |
| Simmondsia chinensis | GWHAASQ00000005 | 2 | CH_sci_86 | 4 | 21 | 0.00000139149 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_526 | 3 | 3 | 0.000000124594 |
| Theobroma cacao | Chromosome_5 | 2 | CH_tca_172 | 3 | 3 | 0.000000281615 |
| Tripterygium wilfordii | NC_052244.1 | 2 | CH_twi_88 | 3 | 5 | 0.0000000466208 |
| Vitis vinifera | chr4 | 2 | CH_vvi_209 | 3 | 5 | 0.00000303662 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |