Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.branched-chain amino acid.branched-chain alpha-keto acid dehydrogenase complex.E1 2-oxoisovalerate dehydrogenase subcomplex.subunit alpha

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr9 1 CH_camsi_610 2 3 0.000137561
Capsicum annuum PGAv.1.6.scaffold1156 1 CH_can_334 2 2 0.000247831
Daucus carota DCARv2_Chr4 1 CH_dca_279 2 2 0.000191333
Durio zibethinus NW_019167937.1 1 CH_dzi_276 2 2 0.000278093
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_269 3 8 0.000000133485
Salvia bowleyana GWHASIU00000001 1 CH_sbo_170 3 7 0.000000434654
Solanum lycopersicum SL4.0ch06 1 CH_sly_459 2 2 0.000352164
Solanum pennellii Spenn-ch06 1 CH_spe_419 2 2 0.000266874
Theobroma cacao Chromosome_8 1 CH_tca_338 2 2 0.000219716
Camellia sinensis var. sinensis Chr9 2 CH_camsi_610 2 3 0.000137561
Capsicum annuum PGAv.1.6.scaffold1156 2 CH_can_334 2 2 0.000247831
Daucus carota DCARv2_Chr4 2 CH_dca_279 2 2 0.000191333
Durio zibethinus NW_019167937.1 2 CH_dzi_276 2 2 0.000278093
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_269 3 8 0.000000133485
Salvia bowleyana GWHASIU00000001 2 CH_sbo_170 3 7 0.000000434654
Solanum lycopersicum SL4.0ch06 2 CH_sly_459 2 2 0.000352164
Solanum pennellii Spenn-ch06 2 CH_spe_419 2 2 0.000266874
Theobroma cacao Chromosome_8 2 CH_tca_338 2 2 0.000219716

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001