Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.threonine.threonine aldolase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 1 CH_amhyb_255 2 3 0.000757523
Brassica carinata ChrC05 1 CH_bca_1178 2 2 0.000961939
Brassica carinata ChrB03 1 CH_bca_1179 2 2 0.000961939
Brassica carinata ChrC07 1 CH_bca_952 3 34 0.000491179
Brassica napus C08 1 CH_bna_98 5 44 0.000000000762188
Corylus avellana 2 1 CH_cav_146 3 10 0.00000105783
Nelumbo nucifera chr3 1 CH_nnu_376 2 2 0.000261609
Petunia axillaris Peaxi162Scf00135 1 CH_pax_217 2 2 0.0000703556
Rhododendron simsii chr05 1 CH_rsi_453 2 2 0.000193592
Sechium edule LG06 1 CH_sed_322 2 3 0.000642039
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_338 2 2 0.000278772
Zea mays 2 1 CH_zma_260 2 2 0.000511313
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 2 CH_amhyb_255 2 3 0.000757523
Brassica carinata ChrC05 2 CH_bca_1178 2 2 0.000961939
Brassica carinata ChrB03 2 CH_bca_1179 2 2 0.000961939
Brassica carinata ChrC07 2 CH_bca_952 3 34 0.000491179
Corylus avellana 2 2 CH_cav_146 3 10 0.00000105783
Nelumbo nucifera chr3 2 CH_nnu_376 2 2 0.000261609
Petunia axillaris Peaxi162Scf00135 2 CH_pax_217 2 2 0.0000703556
Rhododendron simsii chr05 2 CH_rsi_453 2 2 0.000193592
Sechium edule LG06 2 CH_sed_322 2 3 0.000642039
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_338 2 2 0.000278772
Zea mays 2 2 CH_zma_260 2 2 0.000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001