Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-aminobutyric acid pyruvate transaminase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC05 1 CH_bca_1144 2 3 0.000961902
Brassica carinata ChrB06 1 CH_bca_869 2 2 0.000320646
Brassica oleracea C5 1 CH_bol_332 2 4 0.000294167
Brassica rapa A05 1 CH_bra_257 2 4 0.000257577
Cannabis sativa NC_044379.1 1 CH_cansat_243 2 2 0.0000656642
Capsicum annuum PGAv.1.6.scaffold816 1 CH_can_450 2 2 0.000826105
Chenopodium quinoa C_Quinoa_Scaffold_2370 1 CH_cqu_448 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_3086 1 CH_cqu_595 2 3 0.000852831
Cucumis sativus L. chr4 1 CH_csa_273 2 2 0.000250428
Eutrema salsugineum scaffold_13 1 CH_esa_191 2 2 0.0000761499
Fragaria x ananassa Fvb6-4 1 CH_fan_610 2 3 0.000832634
Fragaria vesca Fvb6 1 CH_fve_382 2 4 0.00035344
Lupinus albus Lalb_Chr19 1 CH_lal_83 3 4 0.0000000661044
Oryza sativa ssp. japonica chr04 1 CH_osa_328 2 2 0.000316874
Petunia axillaris Peaxi162Scf00047 1 CH_pax_266 2 2 0.000211067
Quercus lobata 4 1 CH_qlo_955 2 5 0.000516249
Solanum pennellii Spenn-ch12 1 CH_spe_535 2 3 0.000800581
Solanum tuberosum ST4.03ch12 1 CH_stu_636 2 3 0.00092236
Trochodendron aralioides group0 1 CH_tar_273 2 2 0.0000600366
Tarenaya hassleriana NW_010970490.1 1 CH_tha_112 2 2 0.000069847
Vitis vinifera chr3 1 CH_vvi_375 2 4 0.000456343
Brassica carinata ChrC05 2 CH_bca_1144 2 3 0.000961902
Brassica carinata ChrB06 2 CH_bca_869 2 2 0.000320646
Brassica oleracea C5 2 CH_bol_332 2 4 0.000294167
Brassica rapa A05 2 CH_bra_257 2 4 0.000257577
Cannabis sativa NC_044379.1 2 CH_cansat_243 2 2 0.0000656642
Capsicum annuum PGAv.1.6.scaffold816 2 CH_can_450 2 2 0.000826105
Chenopodium quinoa C_Quinoa_Scaffold_2370 2 CH_cqu_448 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_3086 2 CH_cqu_595 2 3 0.000852831
Cucumis sativus L. chr4 2 CH_csa_273 2 2 0.000250428
Eutrema salsugineum scaffold_13 2 CH_esa_191 2 2 0.0000761499
Fragaria x ananassa Fvb6-4 2 CH_fan_610 2 3 0.000832634
Fragaria vesca Fvb6 2 CH_fve_382 2 4 0.00035344
Lupinus albus Lalb_Chr19 2 CH_lal_83 3 4 0.0000000661044
Oryza sativa ssp. japonica chr04 2 CH_osa_328 2 2 0.000316874
Petunia axillaris Peaxi162Scf00047 2 CH_pax_266 2 2 0.000211067
Quercus lobata 4 2 CH_qlo_955 2 5 0.000516249
Solanum pennellii Spenn-ch12 2 CH_spe_535 2 3 0.000800581
Solanum tuberosum ST4.03ch12 2 CH_stu_636 2 3 0.00092236
Trochodendron aralioides group0 2 CH_tar_273 2 2 0.0000600366
Tarenaya hassleriana NW_010970490.1 2 CH_tha_112 2 2 0.000069847
Vitis vinifera chr3 2 CH_vvi_375 2 4 0.000456343

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001