Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.shikimate family.tryptophan.tryptophan synthase heterodimer.subunit alpha

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR02 1 CH_aox_83 3 5 0.000000385873
Amborella trichopoda AmTr_v1.0_scaffold00002 1 CH_atr_168 2 2 0.0000794407
Carica papaya supercontig_52 1 CH_cpa_176 2 2 0.0000950661
Fragaria vesca Fvb6 1 CH_fve_332 2 2 0.00017673
Oryza sativa ssp. japonica chr03 1 CH_osa_97 3 4 0.0000000669379
Prunus persica Pp03 1 CH_ppe_82 4 4 0.00000000000622717
Selaginella moellendorffii scaffold_19 1 CH_smo_91 2 2 0.0000933707
Vanilla planifolia CM028156.1 1 CH_vpl_345 2 3 0.000664951
Zea mays 1 1 CH_zma_37 4 7 0.000000000210517
Aquilegia oxysepala CHR02 2 CH_aox_83 3 5 0.000000385873
Amborella trichopoda AmTr_v1.0_scaffold00002 2 CH_atr_168 2 2 0.0000794407
Carica papaya supercontig_52 2 CH_cpa_176 2 2 0.0000950661
Fragaria vesca Fvb6 2 CH_fve_332 2 2 0.00017673
Oryza sativa ssp. japonica chr03 2 CH_osa_97 3 4 0.0000000669379
Prunus persica Pp03 2 CH_ppe_82 4 4 0.00000000000622717
Selaginella moellendorffii scaffold_19 2 CH_smo_91 2 2 0.0000933707
Vanilla planifolia CM028156.1 2 CH_vpl_345 2 3 0.000664951
Zea mays 1 2 CH_zma_37 4 7 0.000000000210517

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001