Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.arogenate dehydrogenase (ADH)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr7 1 CH_acertr_148 3 4 0.000000298174
Amaranthus hybridus AmaHy_arrow1_Scaffold_9 1 CH_amhyb_142 2 2 0.0000841751
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 1 CH_arhy_36 8 14 6.32934e-20
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_46 8 19 1.59078e-18
Brassica carinata ChrB01 1 CH_bca_1061 2 3 0.000641272
Beta vulgaris Chr8_EL10_PGA_scaffold4 1 CH_bvu_179 2 2 0.0000827917
Capsicum annuum PGAv.1.6.scaffold467 1 CH_can_45 5 9 0.000000000000264058
Cicer arietinum L. Ca_LG7_v3 1 CH_car_273 2 2 0.000466981
Corylus avellana 11 1 CH_cav_418 2 2 0.000460017
Carica papaya supercontig_10 1 CH_cpa_277 2 3 0.000285185
Chenopodium quinoa C_Quinoa_Scaffold_3799 1 CH_cqu_431 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_1611 1 CH_cqu_432 2 2 0.000284293
Nicotiana tabacum Nitab4.5_0000071 1 CH_nta_163 2 2 0.000658364
Oryza sativa ssp. japonica chr06 1 CH_osa_349 2 3 0.000475289
Pisum sativum chr4LG4 1 CH_psa_335 2 2 0.000312981
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_332 3 7 0.000000834201
Vitis vinifera chr9 1 CH_vvi_86 4 6 0.0000000000990131
Acer truncatum chr7 2 CH_acertr_148 3 4 0.000000298174
Amaranthus hybridus AmaHy_arrow1_Scaffold_9 2 CH_amhyb_142 2 2 0.0000841751
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 2 CH_arhy_36 8 14 6.32934e-20
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_46 8 19 1.59078e-18
Brassica carinata ChrB01 2 CH_bca_1061 2 3 0.000641272
Beta vulgaris Chr8_EL10_PGA_scaffold4 2 CH_bvu_179 2 2 0.0000827917
Capsicum annuum PGAv.1.6.scaffold467 2 CH_can_45 5 9 0.000000000000264058
Cicer arietinum L. Ca_LG7_v3 2 CH_car_273 2 2 0.000466981
Corylus avellana 11 2 CH_cav_418 2 2 0.000460017
Carica papaya supercontig_10 2 CH_cpa_277 2 3 0.000285185
Chenopodium quinoa C_Quinoa_Scaffold_3799 2 CH_cqu_431 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_1611 2 CH_cqu_432 2 2 0.000284293
Nicotiana tabacum Nitab4.5_0000071 2 CH_nta_163 2 2 0.000658364
Oryza sativa ssp. japonica chr06 2 CH_osa_349 2 3 0.000475289
Pisum sativum chr4LG4 2 CH_psa_335 2 2 0.000312981
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_332 3 7 0.000000834201
Vitis vinifera chr9 2 CH_vvi_86 4 6 0.0000000000990131

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001