Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.chorismate synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_102831_HRSCAF_103044 1 CH_ama_94 2 2 0.000258665
Capsicum annuum PGAv.1.6.scaffold186 1 CH_can_278 2 2 0.0000826105
Coffea canephora chr9 1 CH_ccan_161 2 4 0.0000127767
Erythranthe guttata scaffold_6 1 CH_egut_303 2 2 0.0000728147
Gossypium hirsutum D10 1 CH_ghi_222 3 3 0.0000000598905
Gossypium raimondii Chr11 1 CH_gra_304 2 2 0.000160832
Sapria himalayana scaffold12_13443846 1 CH_shi_160 2 3 0.000171536
Avicennia marina ScioBoG_102831_HRSCAF_103044 2 CH_ama_94 2 2 0.000258665
Capsicum annuum PGAv.1.6.scaffold186 2 CH_can_278 2 2 0.0000826105
Coffea canephora chr9 2 CH_ccan_161 2 4 0.0000127767
Erythranthe guttata scaffold_6 2 CH_egut_303 2 2 0.0000728147
Gossypium hirsutum D10 2 CH_ghi_222 3 3 0.0000000598905
Gossypium hirsutum A10 2 CH_ghi_827 2 2 0.000747644
Gossypium hirsutum D05 2 CH_ghi_828 2 2 0.000747644
Gossypium raimondii Chr11 2 CH_gra_304 2 2 0.000160832
Sapria himalayana scaffold12_13443846 2 CH_shi_160 2 3 0.000171536

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001