Functional clusters
Information
- Type MapMan
- Description Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.chorismate synthase
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Avicennia marina | ScioBoG_102831_HRSCAF_103044 | 1 | CH_ama_94 | 2 | 2 | 0.000258665 |
Capsicum annuum | PGAv.1.6.scaffold186 | 1 | CH_can_278 | 2 | 2 | 0.0000826105 |
Coffea canephora | chr9 | 1 | CH_ccan_161 | 2 | 4 | 0.0000127767 |
Erythranthe guttata | scaffold_6 | 1 | CH_egut_303 | 2 | 2 | 0.0000728147 |
Gossypium hirsutum | D10 | 1 | CH_ghi_222 | 3 | 3 | 0.0000000598905 |
Gossypium raimondii | Chr11 | 1 | CH_gra_304 | 2 | 2 | 0.000160832 |
Sapria himalayana | scaffold12_13443846 | 1 | CH_shi_160 | 2 | 3 | 0.000171536 |
Avicennia marina | ScioBoG_102831_HRSCAF_103044 | 2 | CH_ama_94 | 2 | 2 | 0.000258665 |
Capsicum annuum | PGAv.1.6.scaffold186 | 2 | CH_can_278 | 2 | 2 | 0.0000826105 |
Coffea canephora | chr9 | 2 | CH_ccan_161 | 2 | 4 | 0.0000127767 |
Erythranthe guttata | scaffold_6 | 2 | CH_egut_303 | 2 | 2 | 0.0000728147 |
Gossypium hirsutum | D10 | 2 | CH_ghi_222 | 3 | 3 | 0.0000000598905 |
Gossypium hirsutum | A10 | 2 | CH_ghi_827 | 2 | 2 | 0.000747644 |
Gossypium hirsutum | D05 | 2 | CH_ghi_828 | 2 | 2 | 0.000747644 |
Gossypium raimondii | Chr11 | 2 | CH_gra_304 | 2 | 2 | 0.000160832 |
Sapria himalayana | scaffold12_13443846 | 2 | CH_shi_160 | 2 | 3 | 0.000171536 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |