Functional clusters
Information
- Type MapMan
- Description Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-dehydroquinate dehydratase and shikimate dehydrogenase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-5 | 1 | CH_aar_158 | 2 | 2 | 0.0000912326 |
| Acer truncatum | chr2 | 1 | CH_acertr_17 | 5 | 6 | 0.0000000000000233435 |
| Aquilegia oxysepala | CHR05 | 1 | CH_aox_286 | 2 | 2 | 0.000481193 |
| Amborella trichopoda | AmTr_v1.0_scaffold00057 | 1 | CH_atr_66 | 3 | 3 | 0.00000000946662 |
| Brassica carinata | ChrC09 | 1 | CH_bca_1060 | 2 | 3 | 0.000641272 |
| Camellia sinensis var. sinensis | Chr3 | 1 | CH_camsi_218 | 4 | 23 | 0.0000000127974 |
| Corylus avellana | 2 | 1 | CH_cav_103 | 3 | 3 | 0.0000000881765 |
| Carpinus fangiana | Cfa02 | 1 | CH_cfa_368 | 2 | 3 | 0.000681569 |
| Carya illinoinensis | Chr07 | 1 | CH_cil_218 | 3 | 3 | 0.00000011526 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 1 | CH_cqu_549 | 2 | 2 | 0.000710732 |
| Capsella rubella | scaffold_3 | 1 | CH_cru_269 | 2 | 2 | 0.0000731154 |
| Davidia involucrata | GWHABJS00000005 | 1 | CH_din_144 | 3 | 3 | 0.000000450236 |
| Fragaria vesca | Fvb6 | 1 | CH_fve_401 | 2 | 2 | 0.000353461 |
| Malus domestica | Chr15 | 1 | CH_mdo_683 | 2 | 2 | 0.000568817 |
| Manihot esculenta | Chromosome09 | 1 | CH_mes_164 | 3 | 3 | 0.0000000559323 |
| Nelumbo nucifera | chr4 | 1 | CH_nnu_103 | 3 | 5 | 0.000000114059 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_274 | 2 | 2 | 0.000158437 |
| Punica granatum | NC_045127.1 | 1 | CH_pgr_364 | 2 | 2 | 0.000750356 |
| Punica granatum | NC_045133.1 | 1 | CH_pgr_365 | 2 | 2 | 0.000750356 |
| Prunus persica | Pp06 | 1 | CH_ppe_412 | 2 | 3 | 0.000223789 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_170 | 3 | 3 | 0.00000000760956 |
| Populus trichocarpa | Chr13 | 1 | CH_ptr_544 | 2 | 2 | 0.000867002 |
| Quercus lobata | 3 | 1 | CH_qlo_401 | 3 | 3 | 0.0000000799683 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 1 | CH_rch_665 | 2 | 2 | 0.000239192 |
| Rhododendron simsii | chr07 | 1 | CH_rsi_184 | 3 | 3 | 0.00000012493 |
| Salix brachista | GWHAAZH00000013 | 1 | CH_sbr_385 | 2 | 2 | 0.00063014 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_452 | 3 | 3 | 0.0000000142393 |
| Trochodendron aralioides | group17 | 1 | CH_tar_517 | 2 | 2 | 0.000600366 |
| Theobroma cacao | Chromosome_5 | 1 | CH_tca_174 | 3 | 5 | 0.000000321804 |
| Utricularia gibba | unitig_37 | 1 | CH_ugi_163 | 2 | 2 | 0.0000734592 |
| Vitis vinifera | chr14 | 1 | CH_vvi_137 | 3 | 3 | 0.0000000347148 |
| Aethionema arabicum | LG-5 | 2 | CH_aar_158 | 2 | 2 | 0.0000912326 |
| Acer truncatum | chr2 | 2 | CH_acertr_17 | 5 | 6 | 0.0000000000000233435 |
| Aquilegia oxysepala | CHR05 | 2 | CH_aox_286 | 2 | 2 | 0.000481193 |
| Amborella trichopoda | AmTr_v1.0_scaffold00057 | 2 | CH_atr_66 | 3 | 3 | 0.00000000946662 |
| Brassica carinata | ChrC09 | 2 | CH_bca_1060 | 2 | 3 | 0.000641272 |
| Camellia sinensis var. sinensis | Chr3 | 2 | CH_camsi_218 | 4 | 23 | 0.0000000127974 |
| Corylus avellana | 2 | 2 | CH_cav_103 | 3 | 3 | 0.0000000881765 |
| Carpinus fangiana | Cfa02 | 2 | CH_cfa_368 | 2 | 3 | 0.000681569 |
| Carya illinoinensis | Chr07 | 2 | CH_cil_218 | 3 | 3 | 0.00000011526 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 2 | CH_cqu_549 | 2 | 2 | 0.000710732 |
| Capsella rubella | scaffold_3 | 2 | CH_cru_269 | 2 | 2 | 0.0000731154 |
| Davidia involucrata | GWHABJS00000005 | 2 | CH_din_144 | 3 | 3 | 0.000000450236 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_899 | 2 | 2 | 0.000585274 |
| Fragaria vesca | Fvb6 | 2 | CH_fve_401 | 2 | 2 | 0.000353461 |
| Malus domestica | Chr15 | 2 | CH_mdo_683 | 2 | 2 | 0.000568817 |
| Manihot esculenta | Chromosome09 | 2 | CH_mes_164 | 3 | 3 | 0.0000000559323 |
| Nelumbo nucifera | chr4 | 2 | CH_nnu_103 | 3 | 5 | 0.000000114059 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_274 | 2 | 2 | 0.000158437 |
| Punica granatum | NC_045127.1 | 2 | CH_pgr_364 | 2 | 2 | 0.000750356 |
| Punica granatum | NC_045133.1 | 2 | CH_pgr_365 | 2 | 2 | 0.000750356 |
| Prunus persica | Pp06 | 2 | CH_ppe_412 | 2 | 3 | 0.000223789 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_170 | 3 | 3 | 0.00000000760956 |
| Populus trichocarpa | Chr13 | 2 | CH_ptr_544 | 2 | 2 | 0.000867002 |
| Quercus lobata | 3 | 2 | CH_qlo_401 | 3 | 3 | 0.0000000799683 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 2 | CH_rch_665 | 2 | 2 | 0.000239192 |
| Rhododendron simsii | chr07 | 2 | CH_rsi_184 | 3 | 3 | 0.00000012493 |
| Salix brachista | GWHAAZH00000013 | 2 | CH_sbr_385 | 2 | 2 | 0.00063014 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_452 | 3 | 3 | 0.0000000142393 |
| Trochodendron aralioides | group17 | 2 | CH_tar_517 | 2 | 2 | 0.000600366 |
| Theobroma cacao | Chromosome_5 | 2 | CH_tca_174 | 3 | 5 | 0.000000321804 |
| Utricularia gibba | unitig_37 | 2 | CH_ugi_163 | 2 | 2 | 0.0000734592 |
| Vitis vinifera | chr14 | 2 | CH_vvi_137 | 3 | 3 | 0.0000000347148 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |