Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.leucine.isopropylmalate isomerase heterodimer.small subunit

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 1 CH_aar_192 2 2 0.000273698
Arabidopsis lyrata scaffold_4 1 CH_aly_294 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 1 CH_amhyb_110 2 2 0.0000841751
Arabidopsis thaliana Chr2 1 CH_ath_263 2 2 0.0000859476
Brassica carinata ChrC02 1 CH_bca_773 2 2 0.000213764
Brassica oleracea C4 1 CH_bol_264 2 2 0.0000980584
Brassica rapa A05 1 CH_bra_224 2 2 0.000128794
Beta vulgaris Chr5_EL10_PGA_scaffold2 1 CH_bvu_164 2 2 0.0000827917
Cardamine hirsuta Chr4 1 CH_chi_347 2 2 0.000414723
Capsella rubella scaffold_4 1 CH_cru_409 2 2 0.000731154
Eutrema salsugineum scaffold_10 1 CH_esa_156 2 2 0.0000761499
Lonicera japonica GWHAAZE00000008 1 CH_lonja_176 3 3 0.0000000215197
Salvia bowleyana GWHASIU00000001 1 CH_sbo_326 2 2 0.000136494
Schrenkiella parvula ch4-6 1 CH_spa_158 2 2 0.000078734
Aethionema arabicum LG-1 2 CH_aar_192 2 2 0.000273698
Arabidopsis lyrata scaffold_4 2 CH_aly_294 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 2 CH_amhyb_110 2 2 0.0000841751
Arabidopsis thaliana Chr2 2 CH_ath_263 2 2 0.0000859476
Brassica carinata ChrC02 2 CH_bca_773 2 2 0.000213764
Brassica oleracea C4 2 CH_bol_264 2 2 0.0000980584
Brassica rapa A05 2 CH_bra_224 2 2 0.000128794
Beta vulgaris Chr5_EL10_PGA_scaffold2 2 CH_bvu_164 2 2 0.0000827917
Cardamine hirsuta Chr4 2 CH_chi_347 2 2 0.000414723
Capsella rubella scaffold_4 2 CH_cru_409 2 2 0.000731154
Eutrema salsugineum scaffold_10 2 CH_esa_156 2 2 0.0000761499
Gossypium hirsutum D04 2 CH_ghi_601 2 2 0.000267016
Lonicera japonica GWHAAZE00000008 2 CH_lonja_176 3 3 0.0000000215197
Salvia bowleyana GWHASIU00000001 2 CH_sbo_326 2 2 0.000136494
Schrenkiella parvula ch4-6 2 CH_spa_158 2 2 0.000078734

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001