Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.pyruvate family.alanine.alanine aminotransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_14204_HRSCAF_14270 1 CH_ama_93 2 2 0.000258665
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 1 CH_amhyb_140 2 2 0.0000841751
Chenopodium quinoa C_Quinoa_Scaffold_1677 1 CH_cqu_366 2 2 0.000142146
Oryza sativa ssp. japonica chr10 1 CH_osa_401 2 3 0.000950562
Solanum lycopersicum SL4.0ch03 1 CH_sly_416 2 2 0.000176082
Solanum pennellii Spenn-ch03 1 CH_spe_363 2 2 0.000133437
Zea mays 5 1 CH_zma_253 2 2 0.000511313
Avicennia marina ScioBoG_14204_HRSCAF_14270 2 CH_ama_93 2 2 0.000258665
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 2 CH_amhyb_140 2 2 0.0000841751
Chenopodium quinoa C_Quinoa_Scaffold_1677 2 CH_cqu_366 2 2 0.000142146
Lotus japonicus chr3 2 CH_lja_357 2 4 0.000429016
Oryza sativa ssp. japonica chr10 2 CH_osa_401 2 3 0.000950562
Solanum lycopersicum SL4.0ch03 2 CH_sly_416 2 2 0.000176082
Solanum pennellii Spenn-ch03 2 CH_spe_363 2 2 0.000133437
Zea mays 5 2 CH_zma_253 2 2 0.000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001