Functional clusters
Information
- Type MapMan
- Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.threonine reactive imine intermediate deaminase (RidA)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | AmTr_v1.0_scaffold00037 | 1 | CH_atr_245 | 2 | 2 | 0.000238322 |
Brassica oleracea | C1 | 1 | CH_bol_327 | 2 | 3 | 0.000294167 |
Brassica rapa | A01 | 1 | CH_bra_226 | 2 | 2 | 0.000128794 |
Citrullus lanatus | CG_Chr10 | 1 | CH_cla_110 | 2 | 2 | 0.0000887115 |
Cucumis melo | chr06 | 1 | CH_cme_217 | 2 | 3 | 0.000200127 |
Cucumis sativus L. | chr3 | 1 | CH_csa_197 | 2 | 2 | 0.0000834759 |
Durio zibethinus | NW_019167937.1 | 1 | CH_dzi_117 | 3 | 8 | 0.000000721671 |
Fragaria x ananassa | Fvb3-3 | 1 | CH_fan_420 | 2 | 2 | 0.000185036 |
Hydrangea macrophylla | Hma1.2p1_0673F.1 | 1 | CH_hma_147 | 2 | 2 | 0.000111086 |
Quercus lobata | 8 | 1 | CH_qlo_648 | 2 | 2 | 0.0000516289 |
Amborella trichopoda | AmTr_v1.0_scaffold00037 | 2 | CH_atr_245 | 2 | 2 | 0.000238322 |
Brassica oleracea | C1 | 2 | CH_bol_327 | 2 | 3 | 0.000294167 |
Brassica rapa | A01 | 2 | CH_bra_226 | 2 | 2 | 0.000128794 |
Citrullus lanatus | CG_Chr10 | 2 | CH_cla_110 | 2 | 2 | 0.0000887115 |
Cucumis melo | chr06 | 2 | CH_cme_217 | 2 | 3 | 0.000200127 |
Cucumis sativus L. | chr3 | 2 | CH_csa_197 | 2 | 2 | 0.0000834759 |
Durio zibethinus | NW_019167937.1 | 2 | CH_dzi_117 | 3 | 8 | 0.000000721671 |
Fragaria x ananassa | Fvb3-3 | 2 | CH_fan_420 | 2 | 2 | 0.000185036 |
Hydrangea macrophylla | Hma1.2p1_0673F.1 | 2 | CH_hma_147 | 2 | 2 | 0.000111086 |
Quercus lobata | 8 | 2 | CH_qlo_648 | 2 | 2 | 0.0000516289 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |