Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.threonine reactive imine intermediate deaminase (RidA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00037 1 CH_atr_245 2 2 0.000238322
Brassica oleracea C1 1 CH_bol_327 2 3 0.000294167
Brassica rapa A01 1 CH_bra_226 2 2 0.000128794
Citrullus lanatus CG_Chr10 1 CH_cla_110 2 2 0.0000887115
Cucumis melo chr06 1 CH_cme_217 2 3 0.000200127
Cucumis sativus L. chr3 1 CH_csa_197 2 2 0.0000834759
Durio zibethinus NW_019167937.1 1 CH_dzi_117 3 8 0.000000721671
Fragaria x ananassa Fvb3-3 1 CH_fan_420 2 2 0.000185036
Hydrangea macrophylla Hma1.2p1_0673F.1 1 CH_hma_147 2 2 0.000111086
Quercus lobata 8 1 CH_qlo_648 2 2 0.0000516289
Amborella trichopoda AmTr_v1.0_scaffold00037 2 CH_atr_245 2 2 0.000238322
Brassica oleracea C1 2 CH_bol_327 2 3 0.000294167
Brassica rapa A01 2 CH_bra_226 2 2 0.000128794
Citrullus lanatus CG_Chr10 2 CH_cla_110 2 2 0.0000887115
Cucumis melo chr06 2 CH_cme_217 2 3 0.000200127
Cucumis sativus L. chr3 2 CH_csa_197 2 2 0.0000834759
Durio zibethinus NW_019167937.1 2 CH_dzi_117 3 8 0.000000721671
Fragaria x ananassa Fvb3-3 2 CH_fan_420 2 2 0.000185036
Hydrangea macrophylla Hma1.2p1_0673F.1 2 CH_hma_147 2 2 0.000111086
Quercus lobata 8 2 CH_qlo_648 2 2 0.0000516289

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001