Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.trifunctional methylthioribulose-1-phosphate dehydratase/enolase/phosphatase (DEP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group5 1 CH_ach_222 2 2 0.000543213
Citrus clementina scaffold_1 1 CH_ccl_277 2 2 0.0000820311
Davidia involucrata GWHABJS00000013 1 CH_din_459 2 2 0.000500125
Davidia involucrata GWHABJS00000013 1 CH_din_460 2 2 0.000500125
Magnolia biondii Chr06 1 CH_mbi_654 2 4 0.000874119
Populus trichocarpa Chr11 1 CH_ptr_356 2 2 0.0001734
Sequoiadendron giganteum chr7 1 CH_sgi_375 3 3 0.00000000355983
Selaginella moellendorffii scaffold_4 1 CH_smo_158 3 27 0.000762265
Solanum pennellii Spenn-ch07 1 CH_spe_459 2 3 0.000400297
Vigna mungo CM024079.1 1 CH_vmu_173 2 2 0.0000646141
Actinidia chinensis Lachesis_group5 2 CH_ach_222 2 2 0.000543213
Citrus clementina scaffold_1 2 CH_ccl_277 2 2 0.0000820311
Davidia involucrata GWHABJS00000013 2 CH_din_459 2 2 0.000500125
Davidia involucrata GWHABJS00000013 2 CH_din_460 2 2 0.000500125
Magnolia biondii Chr06 2 CH_mbi_654 2 4 0.000874119
Populus trichocarpa Chr11 2 CH_ptr_356 2 2 0.0001734
Sequoiadendron giganteum chr7 2 CH_sgi_375 3 3 0.00000000355983
Selaginella moellendorffii scaffold_4 2 CH_smo_158 3 27 0.000762265
Solanum pennellii Spenn-ch07 2 CH_spe_459 2 3 0.000400297
Vigna mungo CM024079.1 2 CH_vmu_173 2 2 0.0000646141

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001