Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioribose kinase (MTK)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_718 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 1 CH_arhy_719 2 2 0.000838273
Amborella trichopoda AmTr_v1.0_scaffold00015 1 CH_atr_116 3 10 0.00000113568
Brassica carinata ChrC08 1 CH_bca_615 2 2 0.0000641293
Cicer arietinum L. Ca_LG4_v3 1 CH_car_304 2 5 0.00077821
Citrus clementina scaffold_8 1 CH_ccl_364 2 3 0.000246083
Carpinus fangiana Cfa02 1 CH_cfa_273 2 3 0.000227195
Carya illinoinensis Chr05 1 CH_cil_336 2 2 0.0000619828
Gossypium hirsutum D12 1 CH_ghi_476 2 2 0.0000801047
Glycine max Gm01 1 CH_gma_416 2 2 0.000227734
Gossypium raimondii Chr08 1 CH_gra_233 2 2 0.0000536107
Lonicera japonica GWHAAZE00000009 1 CH_lonja_341 2 2 0.0000598874
Manihot esculenta Chromosome07 1 CH_mes_137 3 3 0.00000000559323
Oryza sativa ssp. japonica chr04 1 CH_osa_196 2 2 0.0000528123
Pisum sativum chr6LG2 1 CH_psa_313 2 4 0.000312965
Phaseolus vulgaris Chr07 1 CH_pvu_256 2 2 0.0000734727
Quercus lobata 11 1 CH_qlo_399 3 6 0.0000000799621
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_562 2 2 0.000119596
Rhododendron simsii chr11 1 CH_rsi_320 2 2 0.0000645307
Salix brachista GWHAAZH00000009 1 CH_sbr_260 2 3 0.000189036
Theobroma cacao Chromosome_2 1 CH_tca_423 2 5 0.000732306
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_202 2 2 0.0000929238
Vitis vinifera chr3 1 CH_vvi_311 2 3 0.00022818
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_718 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 2 CH_arhy_719 2 2 0.000838273
Amborella trichopoda AmTr_v1.0_scaffold00015 2 CH_atr_116 3 10 0.00000113568
Brassica carinata ChrC08 2 CH_bca_615 2 2 0.0000641293
Cicer arietinum L. Ca_LG4_v3 2 CH_car_304 2 5 0.00077821
Citrus clementina scaffold_8 2 CH_ccl_364 2 3 0.000246083
Carpinus fangiana Cfa02 2 CH_cfa_273 2 3 0.000227195
Carya illinoinensis Chr05 2 CH_cil_336 2 2 0.0000619828
Eucalyptus grandis Chr09 2 CH_egr_744 2 3 0.000175577
Gossypium hirsutum D12 2 CH_ghi_476 2 2 0.0000801047
Glycine max Gm01 2 CH_gma_416 2 2 0.000227734
Gossypium raimondii Chr08 2 CH_gra_233 2 2 0.0000536107
Lonicera japonica GWHAAZE00000009 2 CH_lonja_341 2 2 0.0000598874
Manihot esculenta Chromosome07 2 CH_mes_137 3 3 0.00000000559323
Oryza sativa ssp. japonica chr04 2 CH_osa_196 2 2 0.0000528123
Pisum sativum chr6LG2 2 CH_psa_313 2 4 0.000312965
Phaseolus vulgaris Chr07 2 CH_pvu_256 2 2 0.0000734727
Quercus lobata 11 2 CH_qlo_399 3 6 0.0000000799621
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_562 2 2 0.000119596
Rhododendron simsii chr11 2 CH_rsi_320 2 2 0.0000645307
Salix brachista GWHAAZH00000009 2 CH_sbr_260 2 3 0.000189036
Theobroma cacao Chromosome_2 2 CH_tca_423 2 5 0.000732306
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_202 2 2 0.0000929238
Vitis vinifera chr3 2 CH_vvi_311 2 3 0.00022818

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001