Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate decarboxylase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB01 1 CH_bca_620 2 2 0.0000641293
Chara braunii BFEA01000053 1 CH_cbr_82 2 3 0.000215773
Carica papaya supercontig_106 1 CH_cpa_261 2 3 0.000285185
Lonicera japonica GWHAAZE00000003 1 CH_lonja_602 2 2 0.000598874
Physcomitrium patens Chr24 1 CH_ppa_139 2 2 0.000183818
Quercus lobata 11 1 CH_qlo_647 2 2 0.0000516289
Sequoiadendron giganteum chr11 1 CH_sgi_1301 2 2 0.000487151
Sequoiadendron giganteum chr11 1 CH_sgi_1302 2 2 0.000487151
Brassica carinata ChrB01 2 CH_bca_620 2 2 0.0000641293
Chara braunii BFEA01000053 2 CH_cbr_82 2 3 0.000215773
Carica papaya supercontig_106 2 CH_cpa_261 2 3 0.000285185
Lonicera japonica GWHAAZE00000003 2 CH_lonja_602 2 2 0.000598874
Physcomitrium patens Chr24 2 CH_ppa_139 2 2 0.000183818
Quercus lobata 11 2 CH_qlo_647 2 2 0.0000516289
Sequoiadendron giganteum chr11 2 CH_sgi_1301 2 2 0.000487151
Sequoiadendron giganteum chr11 2 CH_sgi_1302 2 2 0.000487151

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001