Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.asparagine.glutamine-dependent asparagine synthetase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC01 1 CH_bca_1095 2 2 0.000769551
Brassica oleracea C3 1 CH_bol_442 2 3 0.000980536
Cicer arietinum L. Ca_LG5_v3 1 CH_car_296 2 3 0.000700425
Citrullus lanatus CG_Chr08 1 CH_cla_69 3 5 0.00000118025
Gossypium hirsutum D09 1 CH_ghi_333 3 4 0.00000155696
Petunia axillaris Peaxi162Scf00540 1 CH_pax_250 2 2 0.000211067
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_4 16 75 9.47157e-41
Rhododendron simsii chr01 1 CH_rsi_435 2 2 0.000193592
Sequoiadendron giganteum chr11 1 CH_sgi_1363 2 2 0.000730727
Utricularia gibba unitig_22 1 CH_ugi_215 2 2 0.000220378
Brassica carinata ChrC01 2 CH_bca_1095 2 2 0.000769551
Brassica oleracea C3 2 CH_bol_442 2 3 0.000980536
Cicer arietinum L. Ca_LG5_v3 2 CH_car_296 2 3 0.000700425
Citrullus lanatus CG_Chr08 2 CH_cla_69 3 5 0.00000118025
Gossypium hirsutum D09 2 CH_ghi_333 3 4 0.00000155696
Petunia axillaris Peaxi162Scf00540 2 CH_pax_250 2 2 0.000211067
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_4 16 75 9.47157e-41
Rhododendron simsii chr01 2 CH_rsi_435 2 2 0.000193592
Sequoiadendron giganteum chr11 2 CH_sgi_1363 2 2 0.000730727
Utricularia gibba unitig_22 2 CH_ugi_215 2 2 0.000220378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001