Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.glutamate family.histidine.phosphoribosyl-formimino-AICAR-phosphate isomerase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC02 1 CH_bca_60 4 6 0.000000000015384
Brassica carinata ChrB02 1 CH_bca_928 2 2 0.000448905
Corchorus olitorius AWUE01020396.1 1 CH_col_75 2 2 0.000292099
Lupinus albus Lalb_Chr06 1 CH_lal_115 3 14 0.00000150351
Rhododendron simsii chr07 1 CH_rsi_144 3 3 0.00000000624652
Sequoiadendron giganteum chr1 1 CH_sgi_1292 2 5 0.000487116
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_328 2 2 0.000278772
Brassica carinata ChrC02 2 CH_bca_60 4 6 0.000000000015384
Brassica carinata ChrB02 2 CH_bca_928 2 2 0.000448905
Corchorus olitorius AWUE01020396.1 2 CH_col_75 2 2 0.000292099
Lupinus albus Lalb_Chr06 2 CH_lal_115 3 14 0.00000150351
Rhododendron simsii chr07 2 CH_rsi_144 3 3 0.00000000624652
Sequoiadendron giganteum chr1 2 CH_sgi_1292 2 5 0.000487116
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_328 2 2 0.000278772

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001