Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.proline.main pathway.pyrroline-5-carboxylate synthetase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Beta vulgaris Chr2_EL10_PGA_scaffold6 1 CH_bvu_290 2 2 0.000827917
Camellia sinensis var. sinensis Chr9 1 CH_camsi_570 3 23 0.0000557943
Chara braunii BFEA01000566 1 CH_cbr_56 2 2 0.0000719269
Lupinus albus Lalb_Chr03 1 CH_lal_393 2 2 0.000787236
Lonicera japonica GWHAAZE00000008 1 CH_lonja_524 2 2 0.000359324
Magnolia biondii Chr14 1 CH_mbi_432 2 2 0.000145698
Quercus lobata 8 1 CH_qlo_779 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_129 4 5 0.0000000000142551
Selaginella moellendorffii scaffold_13 1 CH_smo_89 2 2 0.0000933707
Solanum tuberosum ST4.03ch06 1 CH_stu_357 2 2 0.0000512453
Vanilla planifolia CM028150.1 1 CH_vpl_31 4 22 0.00000000884742
Beta vulgaris Chr2_EL10_PGA_scaffold6 2 CH_bvu_290 2 2 0.000827917
Camellia sinensis var. sinensis Chr9 2 CH_camsi_570 3 23 0.0000557943
Chara braunii BFEA01000566 2 CH_cbr_56 2 2 0.0000719269
Gossypium hirsutum A04 2 CH_ghi_883 2 2 0.000961256
Lupinus albus Lalb_Chr03 2 CH_lal_393 2 2 0.000787236
Lonicera japonica GWHAAZE00000008 2 CH_lonja_524 2 2 0.000359324
Magnolia biondii Chr14 2 CH_mbi_432 2 2 0.000145698
Quercus lobata 8 2 CH_qlo_779 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_129 4 5 0.0000000000142551
Selaginella moellendorffii scaffold_13 2 CH_smo_89 2 2 0.0000933707
Solanum tuberosum ST4.03ch06 2 CH_stu_357 2 2 0.0000512453
Vanilla planifolia CM028150.1 2 CH_vpl_31 4 22 0.00000000884742

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001