Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.gamma-aminobutyrate (GABA).glutamate decarboxylase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group16 1 CH_ach_121 2 2 0.000162964
Arabidopsis lyrata scaffold_5 1 CH_aly_406 2 2 0.000660044
Aquilegia oxysepala CHR03 1 CH_aox_23 5 22 0.00000000000816695
Arabidopsis thaliana Chr2 1 CH_ath_339 2 2 0.000286492
Amborella trichopoda AmTr_v1.0_scaffold00024 1 CH_atr_124 3 13 0.00000270638
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_110 3 4 0.00000082246
Camellia sinensis var. sinensis Chr12 1 CH_camsi_642 2 2 0.000137564
Cannabis sativa NC_044373.1 1 CH_cansat_159 3 7 0.00000226302
Ceratophyllum demersum 3 1 CH_cde_135 3 21 0.000124227
Glycine max Gm08 1 CH_gma_175 3 3 0.000000259319
Magnolia biondii Chr19 1 CH_mbi_199 3 6 0.000000707488
Nelumbo nucifera chr4 1 CH_nnu_298 3 36 0.0000813419
Prunus persica Pp03 1 CH_ppe_450 2 3 0.000447577
Papaver somniferum NC_039367.1 1 CH_pso_248 3 3 0.000000125558
Populus trichocarpa Chr04 1 CH_ptr_533 2 2 0.000867002
Phaseolus vulgaris Chr02 1 CH_pvu_151 3 3 0.000000283418
Quercus lobata 3 1 CH_qlo_962 2 2 0.000516289
Rhododendron simsii chr09 1 CH_rsi_422 2 2 0.000193592
Salix brachista GWHAAZH00000004 1 CH_sbr_373 2 2 0.00063014
Sechium edule LG03 1 CH_sed_328 2 2 0.000713419
Sequoiadendron giganteum chr6 1 CH_sgi_165 5 6 0.00000000000000532259
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_395 2 3 0.00083625
Vigna mungo CM024077.1 1 CH_vmu_387 2 2 0.000646141
Vitis vinifera chr1 1 CH_vvi_326 2 2 0.000228189
Actinidia chinensis Lachesis_group16 2 CH_ach_121 2 2 0.000162964
Arabidopsis lyrata scaffold_5 2 CH_aly_406 2 2 0.000660044
Aquilegia oxysepala CHR03 2 CH_aox_23 5 22 0.00000000000816695
Arabidopsis thaliana Chr2 2 CH_ath_339 2 2 0.000286492
Amborella trichopoda AmTr_v1.0_scaffold00024 2 CH_atr_124 3 13 0.00000270638
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_110 3 4 0.00000082246
Camellia sinensis var. sinensis Chr12 2 CH_camsi_642 2 2 0.000137564
Cannabis sativa NC_044373.1 2 CH_cansat_159 3 7 0.00000226302
Ceratophyllum demersum 3 2 CH_cde_135 3 21 0.000124227
Glycine max Gm08 2 CH_gma_175 3 3 0.000000259319
Magnolia biondii Chr19 2 CH_mbi_199 3 6 0.000000707488
Nelumbo nucifera chr4 2 CH_nnu_298 3 36 0.0000813419
Prunus persica Pp03 2 CH_ppe_450 2 3 0.000447577
Papaver somniferum NC_039367.1 2 CH_pso_248 3 3 0.000000125558
Populus trichocarpa Chr04 2 CH_ptr_533 2 2 0.000867002
Phaseolus vulgaris Chr02 2 CH_pvu_151 3 3 0.000000283418
Quercus lobata 3 2 CH_qlo_962 2 2 0.000516289
Rhododendron simsii chr09 2 CH_rsi_422 2 2 0.000193592
Salix brachista GWHAAZH00000004 2 CH_sbr_373 2 2 0.00063014
Sechium edule LG03 2 CH_sed_328 2 2 0.000713419
Sequoiadendron giganteum chr6 2 CH_sgi_165 5 6 0.00000000000000532259
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_395 2 3 0.00083625
Vigna mungo CM024077.1 2 CH_vmu_387 2 2 0.000646141
Vitis vinifera chr1 2 CH_vvi_326 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001