Functional clusters

Information

  • Type MapMan
  • Description not assigned

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 1 CH_aar_128 29 30 0.0000544946
Aethionema arabicum LG-8 1 CH_aar_175 24 24 0.000161797
Aethionema arabicum LG-3 1 CH_aar_223 26 27 0.000512202
Aethionema arabicum LG-10 1 CH_aar_254 22 22 0.000771166
Acer truncatum chr2 1 CH_acertr_515 30 30 0.000474934
Acer truncatum chr10 1 CH_acertr_516 30 30 0.000474934
Acer truncatum chr2 1 CH_acertr_574 29 29 0.000863024
Arabidopsis lyrata scaffold_8 1 CH_aly_280 28 28 0.000197735
Arabidopsis lyrata scaffold_2 1 CH_aly_435 30 31 0.000807236
Arabidopsis thaliana Chr4 1 CH_ath_286 15 17 0.000099146
Arabidopsis thaliana Chr4 1 CH_ath_288 16 19 0.00011013
Arabidopsis thaliana Chr1 1 CH_ath_358 18 24 0.000303927
Arabidopsis thaliana Chr4 1 CH_ath_360 30 55 0.000321632
Arabidopsis thaliana Chr1 1 CH_ath_380 28 50 0.000475531
Arabidopsis thaliana Chr5 1 CH_ath_433 28 51 0.000862269
Arabidopsis thaliana Chr5 1 CH_ath_434 18 25 0.000890685
Capsicum annuum PGAv.1.6.scaffold65 1 CH_can_310 30 30 0.000228667
Capsicum annuum PGAv.1.6.scaffold449 1 CH_can_311 30 30 0.000228667
Corylus avellana 1 1 CH_cav_310 30 30 0.000215699
Corylus avellana 2 1 CH_cav_311 30 30 0.000215699
Corylus avellana 4 1 CH_cav_312 30 30 0.000215699
Corylus avellana 1 1 CH_cav_382 29 29 0.000401305
Corylus avellana 1 1 CH_cav_458 28 28 0.000746598
Coffea canephora chr5 1 CH_ccan_203 16 73 0.0000512359
Coffea canephora chr7 1 CH_ccan_206 16 76 0.0000637059
Coffea canephora chr7 1 CH_ccan_243 16 77 0.000119846
Coffea canephora chr11 1 CH_ccan_271 16 81 0.000218749
Coffea canephora chr5 1 CH_ccan_363 12 44 0.000726249
Coffea canephora chr6 1 CH_ccan_382 15 80 0.000921849
Coffea canephora chr5 1 CH_ccan_50 12 16 0.000000000422587
Coffea canephora chr5 1 CH_ccan_86 17 62 0.000000265294
Citrus clementina scaffold_5 1 CH_ccl_347 26 26 0.000100359
Citrus clementina scaffold_9 1 CH_ccl_359 29 30 0.000174945
Citrus clementina scaffold_5 1 CH_ccl_432 24 24 0.000443677
Citrus clementina scaffold_1 1 CH_ccl_465 27 28 0.000723506
Citrus clementina scaffold_5 1 CH_ccl_471 30 32 0.000742301
Cardamine hirsuta Chr6 1 CH_chi_200 30 30 0.0000381678
Cardamine hirsuta NSCAFA.230 1 CH_chi_388 26 26 0.000584017
Cardamine hirsuta Chr1 1 CH_chi_389 26 26 0.000584017
Cardamine hirsuta Chr6 1 CH_chi_390 26 26 0.000584017
Capsella rubella scaffold_3 1 CH_cru_203 30 30 0.00000538994
Cucumis sativus L. chr5 1 CH_csa_189 30 30 0.0000635025
Cucumis sativus L. chr4 1 CH_csa_328 26 26 0.000885583
Daucus carota DCARv2_Chr9 1 CH_dca_453 27 27 0.000721646
Erythranthe guttata scaffold_4 1 CH_egut_331 30 31 0.000165374
Erythranthe guttata scaffold_13 1 CH_egut_402 29 30 0.000330711
Eutrema salsugineum scaffold_1 1 CH_esa_298 30 32 0.000662109
Gossypium raimondii Chr05 1 CH_gra_261 27 27 0.0000575062
Gossypium raimondii Chr10 1 CH_gra_269 30 31 0.000101573
Gossypium raimondii Chr09 1 CH_gra_270 30 31 0.000101573
Gossypium raimondii Chr01 1 CH_gra_273 26 26 0.000121971
Gossypium raimondii Chr12 1 CH_gra_450 30 32 0.00088434
Lupinus albus Lalb_Chr06 1 CH_lal_289 30 31 0.000264622
Lupinus albus Lalb_Chr25 1 CH_lal_383 29 30 0.00052652
Lonicera japonica GWHAAZE00000008 1 CH_lonja_562 30 30 0.000359794
Lonicera japonica GWHAAZE00000005 1 CH_lonja_563 30 30 0.000359794
Lonicera japonica GWHAAZE00000005 1 CH_lonja_564 30 30 0.000359794
Lonicera japonica GWHAAZE00000006 1 CH_lonja_565 30 30 0.000359794
Lonicera japonica GWHAAZE00000004 1 CH_lonja_623 29 29 0.00066344
Lonicera japonica GWHAAZE00000004 1 CH_lonja_624 29 29 0.00066344
Malus domestica Chr13 1 CH_mdo_726 22 22 0.000736638
Manihot esculenta Chromosome07 1 CH_mes_241 30 30 0.00000595873
Manihot esculenta Chromosome11 1 CH_mes_242 30 30 0.00000595873
Manihot esculenta Chromosome11 1 CH_mes_325 26 26 0.000118741
Manihot esculenta Chromosome11 1 CH_mes_443 24 24 0.000529954
Petunia axillaris Peaxi162Scf00342 1 CH_pax_154 28 28 0.0000152921
Petunia axillaris Peaxi162Scf00168 1 CH_pax_324 30 32 0.000496943
Punica granatum NC_045134.1 1 CH_pgr_354 18 18 0.000739089
Prunus persica Pp02 1 CH_ppe_300 30 30 0.0000272303
Prunus persica Pp02 1 CH_ppe_522 25 25 0.000860875
Papaver somniferum NC_039364.1 1 CH_pso_381 27 28 0.000017957
Populus trichocarpa Chr19 1 CH_ptr_287 30 31 0.0000440365
Populus trichocarpa Chr19 1 CH_ptr_288 30 31 0.0000440365
Populus trichocarpa Chr12 1 CH_ptr_460 30 32 0.000391667
Phaseolus vulgaris Chr04 1 CH_pvu_190 30 30 0.0000018431
Phaseolus vulgaris Chr08 1 CH_pvu_191 30 30 0.0000018431
Phaseolus vulgaris Chr08 1 CH_pvu_250 29 30 0.0000673057
Phaseolus vulgaris Chr10 1 CH_pvu_371 30 32 0.000283677
Phaseolus vulgaris Chr01 1 CH_pvu_372 30 32 0.000283677
Quercus lobata 4 1 CH_qlo_915 30 30 0.000340946
Quercus lobata 5 1 CH_qlo_916 30 30 0.000340946
Quercus lobata 5 1 CH_qlo_917 30 30 0.000340946
Quercus lobata 7 1 CH_qlo_918 30 30 0.000340946
Quercus lobata 4 1 CH_qlo_991 29 29 0.000632908
Quercus lobata 4 1 CH_qlo_992 29 29 0.000632908
Quercus lobata 5 1 CH_qlo_993 29 29 0.000632908
Rhododendron simsii chr10 1 CH_rsi_512 30 30 0.000567387
Rhododendron simsii chr11 1 CH_rsi_513 30 30 0.000567387
Rhododendron simsii chr12 1 CH_rsi_514 30 30 0.000567387
Rhododendron simsii chr13 1 CH_rsi_515 30 30 0.000567387
Rhododendron simsii chr01 1 CH_rsi_516 30 30 0.000567387
Rhododendron simsii chr04 1 CH_rsi_517 30 30 0.000567387
Rhododendron simsii chr04 1 CH_rsi_518 30 30 0.000567387
Rhododendron simsii chr05 1 CH_rsi_519 30 30 0.000567387
Salix brachista GWHAAZH00000011 1 CH_sbr_150 30 30 0.00000223957
Salix brachista GWHAAZH00000016 1 CH_sbr_246 25 25 0.000110429
Salix brachista GWHAAZH00000007 1 CH_sbr_323 27 28 0.000362721
Sechium edule LG01 1 CH_sed_348 21 21 0.00089703
Solanum lycopersicum SL4.0ch04 1 CH_sly_569 30 30 0.000919978
Trochodendron aralioides group7 1 CH_tar_214 30 30 0.0000153149
Theobroma cacao Chromosome_4 1 CH_tca_419 28 28 0.000671767
Theobroma cacao Chromosome_7 1 CH_tca_420 28 28 0.000671767
Tarenaya hassleriana NW_010965304.1 1 CH_tha_101 29 33 0.0000646122
Tripterygium wilfordii NC_052248.1 1 CH_twi_191 29 33 0.0000752678
Tripterygium wilfordii NC_052239.1 1 CH_twi_298 18 18 0.000608314
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_388 29 31 0.000564339
Vitis vinifera chr5 1 CH_vvi_307 30 30 0.000180323
Aethionema arabicum LG-6 2 CH_aar_128 29 30 0.0000544946
Aethionema arabicum LG-8 2 CH_aar_175 24 24 0.000161797
Aethionema arabicum LG-3 2 CH_aar_223 26 27 0.000512202
Aethionema arabicum LG-10 2 CH_aar_254 22 22 0.000771166
Acer truncatum chr2 2 CH_acertr_515 30 30 0.000474934
Acer truncatum chr10 2 CH_acertr_516 30 30 0.000474934
Acer truncatum chr2 2 CH_acertr_574 29 29 0.000863024
Arabidopsis lyrata scaffold_8 2 CH_aly_280 28 28 0.000197735
Arabidopsis lyrata scaffold_2 2 CH_aly_435 30 31 0.000807236
Arabidopsis thaliana Chr4 2 CH_ath_286 15 17 0.000099146
Arabidopsis thaliana Chr4 2 CH_ath_288 16 19 0.00011013
Arabidopsis thaliana Chr1 2 CH_ath_358 18 24 0.000303927
Arabidopsis thaliana Chr4 2 CH_ath_360 30 55 0.000321632
Arabidopsis thaliana Chr1 2 CH_ath_380 28 50 0.000475531
Arabidopsis thaliana Chr5 2 CH_ath_433 28 51 0.000862269
Arabidopsis thaliana Chr5 2 CH_ath_434 18 25 0.000890685
Capsicum annuum PGAv.1.6.scaffold65 2 CH_can_310 30 30 0.000228667
Capsicum annuum PGAv.1.6.scaffold449 2 CH_can_311 30 30 0.000228667
Corylus avellana 1 2 CH_cav_310 30 30 0.000215699
Corylus avellana 2 2 CH_cav_311 30 30 0.000215699
Corylus avellana 4 2 CH_cav_312 30 30 0.000215699
Corylus avellana 1 2 CH_cav_382 29 29 0.000401305
Corylus avellana 1 2 CH_cav_458 28 28 0.000746598
Coffea canephora chr5 2 CH_ccan_203 16 73 0.0000512359
Coffea canephora chr7 2 CH_ccan_206 16 76 0.0000637059
Coffea canephora chr7 2 CH_ccan_243 16 77 0.000119846
Coffea canephora chr11 2 CH_ccan_271 16 81 0.000218749
Coffea canephora chr5 2 CH_ccan_363 12 44 0.000726249
Coffea canephora chr6 2 CH_ccan_382 15 80 0.000921849
Coffea canephora chr5 2 CH_ccan_50 12 16 0.000000000422587
Coffea canephora chr5 2 CH_ccan_86 17 62 0.000000265294
Citrus clementina scaffold_5 2 CH_ccl_347 26 26 0.000100359
Citrus clementina scaffold_9 2 CH_ccl_359 29 30 0.000174945
Citrus clementina scaffold_5 2 CH_ccl_432 24 24 0.000443677
Citrus clementina scaffold_1 2 CH_ccl_465 27 28 0.000723506
Citrus clementina scaffold_5 2 CH_ccl_471 30 32 0.000742301
Cardamine hirsuta Chr6 2 CH_chi_200 30 30 0.0000381678
Cardamine hirsuta NSCAFA.230 2 CH_chi_388 26 26 0.000584017
Cardamine hirsuta Chr1 2 CH_chi_389 26 26 0.000584017
Cardamine hirsuta Chr6 2 CH_chi_390 26 26 0.000584017
Capsella rubella scaffold_3 2 CH_cru_203 30 30 0.00000538994
Cucumis sativus L. chr5 2 CH_csa_189 30 30 0.0000635025
Cucumis sativus L. chr4 2 CH_csa_328 26 26 0.000885583
Daucus carota DCARv2_Chr9 2 CH_dca_453 27 27 0.000721646
Eucalyptus grandis Chr11 2 CH_egr_647 30 30 0.0000473967
Eucalyptus grandis Chr03 2 CH_egr_648 30 30 0.0000473967
Eucalyptus grandis Chr06 2 CH_egr_649 30 30 0.0000473967
Eucalyptus grandis Chr05 2 CH_egr_650 30 30 0.0000473967
Eucalyptus grandis Chr03 2 CH_egr_798 28 28 0.000184767
Eucalyptus grandis Chr04 2 CH_egr_915 26 26 0.000720195
Eucalyptus grandis Chr10 2 CH_egr_917 30 31 0.000749122
Eucalyptus grandis Chr01 2 CH_egr_918 30 31 0.000749122
Erythranthe guttata scaffold_4 2 CH_egut_331 30 31 0.000165374
Erythranthe guttata scaffold_13 2 CH_egut_402 29 30 0.000330711
Eutrema salsugineum scaffold_1 2 CH_esa_298 30 32 0.000662109
Gossypium hirsutum A04 2 CH_ghi_647 30 31 0.000298137
Gossypium hirsutum A11 2 CH_ghi_648 30 31 0.000298137
Gossypium hirsutum D05 2 CH_ghi_649 30 31 0.000298137
Gossypium hirsutum D05 2 CH_ghi_650 30 31 0.000298137
Gossypium hirsutum D11 2 CH_ghi_651 30 31 0.000298137
Gossypium hirsutum D02 2 CH_ghi_804 25 25 0.000718766
Gossypium raimondii Chr05 2 CH_gra_261 27 27 0.0000575062
Gossypium raimondii Chr10 2 CH_gra_269 30 31 0.000101573
Gossypium raimondii Chr09 2 CH_gra_270 30 31 0.000101573
Gossypium raimondii Chr01 2 CH_gra_273 26 26 0.000121971
Gossypium raimondii Chr12 2 CH_gra_450 30 32 0.00088434
Lupinus albus Lalb_Chr06 2 CH_lal_289 30 31 0.000264622
Lupinus albus Lalb_Chr25 2 CH_lal_383 29 30 0.00052652
Lonicera japonica GWHAAZE00000008 2 CH_lonja_562 30 30 0.000359794
Lonicera japonica GWHAAZE00000005 2 CH_lonja_563 30 30 0.000359794
Lonicera japonica GWHAAZE00000005 2 CH_lonja_564 30 30 0.000359794
Lonicera japonica GWHAAZE00000006 2 CH_lonja_565 30 30 0.000359794
Lonicera japonica GWHAAZE00000004 2 CH_lonja_623 29 29 0.00066344
Lonicera japonica GWHAAZE00000004 2 CH_lonja_624 29 29 0.00066344
Malus domestica Chr13 2 CH_mdo_726 22 22 0.000736638
Manihot esculenta Chromosome07 2 CH_mes_241 30 30 0.00000595873
Manihot esculenta Chromosome11 2 CH_mes_242 30 30 0.00000595873
Manihot esculenta Chromosome11 2 CH_mes_325 26 26 0.000118741
Manihot esculenta Chromosome11 2 CH_mes_443 24 24 0.000529954
Petunia axillaris Peaxi162Scf00342 2 CH_pax_154 28 28 0.0000152921
Petunia axillaris Peaxi162Scf00168 2 CH_pax_324 30 32 0.000496943
Punica granatum NC_045134.1 2 CH_pgr_354 18 18 0.000739089
Prunus persica Pp02 2 CH_ppe_300 30 30 0.0000272303
Prunus persica Pp02 2 CH_ppe_522 25 25 0.000860875
Papaver somniferum NC_039364.1 2 CH_pso_381 27 28 0.000017957
Populus trichocarpa Chr19 2 CH_ptr_287 30 31 0.0000440365
Populus trichocarpa Chr19 2 CH_ptr_288 30 31 0.0000440365
Populus trichocarpa Chr12 2 CH_ptr_460 30 32 0.000391667
Phaseolus vulgaris Chr04 2 CH_pvu_190 30 30 0.0000018431
Phaseolus vulgaris Chr08 2 CH_pvu_191 30 30 0.0000018431
Phaseolus vulgaris Chr08 2 CH_pvu_250 29 30 0.0000673057
Phaseolus vulgaris Chr10 2 CH_pvu_371 30 32 0.000283677
Phaseolus vulgaris Chr01 2 CH_pvu_372 30 32 0.000283677
Quercus lobata 4 2 CH_qlo_915 30 30 0.000340946
Quercus lobata 5 2 CH_qlo_916 30 30 0.000340946
Quercus lobata 5 2 CH_qlo_917 30 30 0.000340946
Quercus lobata 7 2 CH_qlo_918 30 30 0.000340946
Quercus lobata 4 2 CH_qlo_991 29 29 0.000632908
Quercus lobata 4 2 CH_qlo_992 29 29 0.000632908
Quercus lobata 5 2 CH_qlo_993 29 29 0.000632908
Rhododendron simsii chr10 2 CH_rsi_512 30 30 0.000567387
Rhododendron simsii chr11 2 CH_rsi_513 30 30 0.000567387
Rhododendron simsii chr12 2 CH_rsi_514 30 30 0.000567387
Rhododendron simsii chr13 2 CH_rsi_515 30 30 0.000567387
Rhododendron simsii chr01 2 CH_rsi_516 30 30 0.000567387
Rhododendron simsii chr04 2 CH_rsi_517 30 30 0.000567387
Rhododendron simsii chr04 2 CH_rsi_518 30 30 0.000567387
Rhododendron simsii chr05 2 CH_rsi_519 30 30 0.000567387
Salix brachista GWHAAZH00000011 2 CH_sbr_150 30 30 0.00000223957
Salix brachista GWHAAZH00000016 2 CH_sbr_246 25 25 0.000110429
Salix brachista GWHAAZH00000007 2 CH_sbr_323 27 28 0.000362721
Sechium edule LG01 2 CH_sed_348 21 21 0.00089703
Solanum lycopersicum SL4.0ch04 2 CH_sly_569 30 30 0.000919978
Trochodendron aralioides group7 2 CH_tar_214 30 30 0.0000153149
Theobroma cacao Chromosome_4 2 CH_tca_419 28 28 0.000671767
Theobroma cacao Chromosome_7 2 CH_tca_420 28 28 0.000671767
Tarenaya hassleriana NW_010965304.1 2 CH_tha_101 29 33 0.0000646122
Tripterygium wilfordii NC_052248.1 2 CH_twi_191 29 33 0.0000752678
Tripterygium wilfordii NC_052239.1 2 CH_twi_298 18 18 0.000608314
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_388 29 31 0.000564339
Vitis vinifera chr5 2 CH_vvi_307 30 30 0.000180323

Available child term results

Ontology identifier Description Number of clusters
35.1 not assigned.annotated 572
35.2 not assigned.not annotate 3136

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001