Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.sorbitol metabolism.sorbitol dehydrogenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_526 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_527 2 2 0.00017963
Camellia sinensis var. sinensis Chr7 1 CH_camsi_129 4 6 0.000000000065078
Cannabis sativa NC_044374.1 1 CH_cansat_250 2 2 0.0000656642
Corylus avellana 5 1 CH_cav_286 2 2 0.0000766695
Carpinus fangiana Cfa03 1 CH_cfa_253 2 2 0.0000757346
Carya illinoinensis Chr03 1 CH_cil_407 2 3 0.000185943
Cucumis melo chr06 1 CH_cme_203 2 2 0.0000667111
Carica papaya supercontig_4 1 CH_cpa_38 3 3 0.000000013557
Cucumis sativus L. chr3 1 CH_csa_224 2 2 0.0000834759
Daucus carota DCARv2_Chr5 1 CH_dca_249 2 2 0.0000637775
Durio zibethinus NW_019168381.1 1 CH_dzi_195 2 2 0.0000463489
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_289 2 2 0.0000448722
Fragaria vesca Fvb7 1 CH_fve_286 2 2 0.0000589102
Gossypium hirsutum A12 1 CH_ghi_98 4 4 0.00000000000399803
Gossypium raimondii Chr08 1 CH_gra_322 2 2 0.000160832
Lonicera japonica GWHAAZE00000008 1 CH_lonja_83 4 4 0.000000000000644417
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_347 2 2 0.0000514007
Malus domestica Chr01 1 CH_mdo_16 7 10 9.64309e-20
Malus domestica Chr07 1 CH_mdo_329 3 5 0.00000784895
Malus domestica Chr00 1 CH_mdo_364 3 7 0.0000274617
Manihot esculenta Chromosome06 1 CH_mes_305 2 2 0.0000610631
Punica granatum NC_045128.1 1 CH_pgr_231 2 2 0.0000750356
Prunus persica Pp08 1 CH_ppe_518 2 2 0.000745962
Populus trichocarpa Chr12 1 CH_ptr_323 2 2 0.0000578001
Quercus lobata 9 1 CH_qlo_319 3 3 0.00000000399842
Rhododendron simsii chr09 1 CH_rsi_460 2 2 0.000193592
Salix brachista GWHAAZH00000012 1 CH_sbr_239 2 2 0.000063014
Sequoiadendron giganteum chr8 1 CH_sgi_1257 2 2 0.000292291
Selenicereus undatus Scaffold_19641 1 CH_sun_218 2 2 0.000217992
Trochodendron aralioides group15 1 CH_tar_412 2 4 0.000360198
Theobroma cacao Chromosome_3 1 CH_tca_301 2 2 0.0000732386
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_103 3 3 0.0000000518115
Vanilla planifolia CM028153.1 1 CH_vpl_307 2 4 0.000443295
Vitis vinifera chr16 1 CH_vvi_119 3 3 0.0000000086787
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_526 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_527 2 2 0.00017963
Camellia sinensis var. sinensis Chr7 2 CH_camsi_129 4 6 0.000000000065078
Cannabis sativa NC_044374.1 2 CH_cansat_250 2 2 0.0000656642
Corylus avellana 5 2 CH_cav_286 2 2 0.0000766695
Carpinus fangiana Cfa03 2 CH_cfa_253 2 2 0.0000757346
Carya illinoinensis Chr03 2 CH_cil_407 2 3 0.000185943
Cucumis melo chr06 2 CH_cme_203 2 2 0.0000667111
Carica papaya supercontig_4 2 CH_cpa_38 3 3 0.000000013557
Cucumis sativus L. chr3 2 CH_csa_224 2 2 0.0000834759
Daucus carota DCARv2_Chr5 2 CH_dca_249 2 2 0.0000637775
Durio zibethinus NW_019168381.1 2 CH_dzi_195 2 2 0.0000463489
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_289 2 2 0.0000448722
Eucalyptus grandis Chr11 2 CH_egr_708 2 2 0.0000585274
Fragaria vesca Fvb7 2 CH_fve_286 2 2 0.0000589102
Gossypium hirsutum D09 2 CH_ghi_854 2 2 0.000747644
Gossypium hirsutum A12 2 CH_ghi_98 4 4 0.00000000000399803
Gossypium raimondii Chr08 2 CH_gra_322 2 2 0.000160832
Lonicera japonica GWHAAZE00000008 2 CH_lonja_83 4 4 0.000000000000644417
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_347 2 2 0.0000514007
Malus domestica Chr01 2 CH_mdo_16 7 10 9.64309e-20
Malus domestica Chr07 2 CH_mdo_329 3 5 0.00000784895
Malus domestica Chr00 2 CH_mdo_364 3 7 0.0000274617
Manihot esculenta Chromosome06 2 CH_mes_305 2 2 0.0000610631
Punica granatum NC_045128.1 2 CH_pgr_231 2 2 0.0000750356
Prunus persica Pp08 2 CH_ppe_518 2 2 0.000745962
Populus trichocarpa Chr12 2 CH_ptr_323 2 2 0.0000578001
Quercus lobata 9 2 CH_qlo_319 3 3 0.00000000399842
Rhododendron simsii chr09 2 CH_rsi_460 2 2 0.000193592
Salix brachista GWHAAZH00000012 2 CH_sbr_239 2 2 0.000063014
Sequoiadendron giganteum chr8 2 CH_sgi_1257 2 2 0.000292291
Selenicereus undatus Scaffold_19641 2 CH_sun_218 2 2 0.000217992
Trochodendron aralioides group15 2 CH_tar_412 2 4 0.000360198
Theobroma cacao Chromosome_3 2 CH_tca_301 2 2 0.0000732386
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_103 3 3 0.0000000518115
Vanilla planifolia CM028153.1 2 CH_vpl_307 2 4 0.000443295
Vitis vinifera chr16 2 CH_vvi_119 3 3 0.0000000086787

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001