Functional clusters
Information
- Type MapMan
- Description Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 1 | CH_amhyb_23 | 4 | 7 | 0.00000000219117 |
| Aquilegia oxysepala | CHR06 | 1 | CH_aox_275 | 2 | 2 | 0.000481193 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 1 | CH_bvu_40 | 5 | 14 | 0.0000000000887668 |
| Carpinus fangiana | Cfa03 | 1 | CH_cfa_122 | 3 | 3 | 0.00000048182 |
| Carpinus fangiana | Cfa07 | 1 | CH_cfa_144 | 3 | 4 | 0.00000192693 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1257 | 1 | CH_cqu_335 | 3 | 9 | 0.000102835 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1040 | 1 | CH_cqu_336 | 3 | 9 | 0.000102835 |
| Durio zibethinus | NW_019167937.1 | 1 | CH_dzi_94 | 3 | 3 | 0.000000180454 |
| Helianthus annuus | HanXRQChr05 | 1 | CH_han_631 | 2 | 2 | 0.000386429 |
| Lupinus albus | Lalb_Chr14 | 1 | CH_lal_86 | 3 | 3 | 0.0000000826343 |
| Lonicera japonica | GWHAAZE00000008 | 1 | CH_lonja_19 | 9 | 13 | 1.91833e-24 |
| Nicotiana tabacum | Nitab4.5_0000287 | 1 | CH_nta_135 | 2 | 2 | 0.000329182 |
| Oryza sativa ssp. japonica | chr09 | 1 | CH_osa_138 | 3 | 5 | 0.000000937056 |
| Petunia axillaris | Peaxi162Scf00252 | 1 | CH_pax_109 | 3 | 4 | 0.000000593943 |
| Punica granatum | NC_045127.1 | 1 | CH_pgr_316 | 2 | 2 | 0.000450214 |
| Quercus lobata | CM012294 | 1 | CH_qlo_400 | 3 | 3 | 0.0000000799683 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_163 | 4 | 8 | 0.000000000465564 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_124 | 6 | 6 | 1.05956e-17 |
| Theobroma cacao | Chromosome_8 | 1 | CH_tca_159 | 3 | 3 | 0.000000160923 |
| Vanilla planifolia | CM028152.1 | 1 | CH_vpl_312 | 2 | 2 | 0.000443328 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 2 | CH_amhyb_23 | 4 | 7 | 0.00000000219117 |
| Aquilegia oxysepala | CHR06 | 2 | CH_aox_275 | 2 | 2 | 0.000481193 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 2 | CH_bvu_40 | 5 | 14 | 0.0000000000887668 |
| Carpinus fangiana | Cfa03 | 2 | CH_cfa_122 | 3 | 3 | 0.00000048182 |
| Carpinus fangiana | Cfa07 | 2 | CH_cfa_144 | 3 | 4 | 0.00000192693 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1257 | 2 | CH_cqu_335 | 3 | 9 | 0.000102835 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1040 | 2 | CH_cqu_336 | 3 | 9 | 0.000102835 |
| Durio zibethinus | NW_019167937.1 | 2 | CH_dzi_94 | 3 | 3 | 0.000000180454 |
| Eucalyptus grandis | Chr06 | 2 | CH_egr_827 | 2 | 2 | 0.000351165 |
| Helianthus annuus | HanXRQChr05 | 2 | CH_han_631 | 2 | 2 | 0.000386429 |
| Lupinus albus | Lalb_Chr14 | 2 | CH_lal_86 | 3 | 3 | 0.0000000826343 |
| Lonicera japonica | GWHAAZE00000008 | 2 | CH_lonja_19 | 9 | 13 | 1.91833e-24 |
| Nicotiana tabacum | Nitab4.5_0000287 | 2 | CH_nta_135 | 2 | 2 | 0.000329182 |
| Oryza sativa ssp. japonica | chr09 | 2 | CH_osa_138 | 3 | 5 | 0.000000937056 |
| Petunia axillaris | Peaxi162Scf00252 | 2 | CH_pax_109 | 3 | 4 | 0.000000593943 |
| Punica granatum | NC_045127.1 | 2 | CH_pgr_316 | 2 | 2 | 0.000450214 |
| Quercus lobata | CM012294 | 2 | CH_qlo_400 | 3 | 3 | 0.0000000799683 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_163 | 4 | 8 | 0.000000000465564 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_124 | 6 | 6 | 1.05956e-17 |
| Theobroma cacao | Chromosome_8 | 2 | CH_tca_159 | 3 | 3 | 0.000000160923 |
| Vanilla planifolia | CM028152.1 | 2 | CH_vpl_312 | 2 | 2 | 0.000443328 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |