Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.glucan, water dikinase (GWD)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group16 1 CH_ach_211 2 3 0.000488869
Brassica carinata ChrC09 1 CH_bca_860 2 2 0.000320646
Camellia sinensis var. sinensis Chr10 1 CH_camsi_620 2 3 0.000137561
Ceratophyllum demersum 2 1 CH_cde_233 2 2 0.000473878
Daucus carota DCARv2_Chr2 1 CH_dca_362 2 2 0.000382665
Lupinus albus Lalb_Chr09 1 CH_lal_78 3 3 0.0000000413171
Lonicera japonica GWHAAZE00000004 1 CH_lonja_469 2 2 0.000179662
Physcomitrium patens Chr08 1 CH_ppa_165 2 2 0.000183818
Sequoiadendron giganteum chr6 1 CH_sgi_1228 2 2 0.000292291
Sequoiadendron giganteum chr1 1 CH_sgi_1229 2 2 0.000292291
Selenicereus undatus Scaffold_3410 1 CH_sun_198 2 2 0.000217992
Actinidia chinensis Lachesis_group16 2 CH_ach_211 2 3 0.000488869
Brassica carinata ChrC09 2 CH_bca_860 2 2 0.000320646
Camellia sinensis var. sinensis Chr10 2 CH_camsi_620 2 3 0.000137561
Ceratophyllum demersum 2 2 CH_cde_233 2 2 0.000473878
Daucus carota DCARv2_Chr2 2 CH_dca_362 2 2 0.000382665
Gossypium hirsutum A01 2 CH_ghi_779 2 2 0.000560733
Lupinus albus Lalb_Chr09 2 CH_lal_78 3 3 0.0000000413171
Lonicera japonica GWHAAZE00000004 2 CH_lonja_469 2 2 0.000179662
Physcomitrium patens Chr08 2 CH_ppa_165 2 2 0.000183818
Sequoiadendron giganteum chr6 2 CH_sgi_1228 2 2 0.000292291
Sequoiadendron giganteum chr1 2 CH_sgi_1229 2 2 0.000292291
Selenicereus undatus Scaffold_3410 2 CH_sun_198 2 2 0.000217992

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001