Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.nucleotide sugar biosynthesis.nucleotide rhamnose biosynthesis.UDP-L-rhamnose synthase (RHM)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR01 1 CH_aox_237 2 2 0.000240597
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_283 2 3 0.000745074
Chara braunii BFEA01000093 1 CH_cbr_134 2 3 0.000647303
Carica papaya supercontig_23 1 CH_cpa_314 2 2 0.000285198
Gossypium raimondii Chr02 1 CH_gra_447 2 2 0.00080416
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_461 2 2 0.000308404
Malus domestica Chr09 1 CH_mdo_274 3 6 0.0000015096
Quercus lobata 8 1 CH_qlo_901 2 2 0.000309773
Aquilegia oxysepala CHR01 2 CH_aox_237 2 2 0.000240597
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_283 2 3 0.000745074
Chara braunii BFEA01000093 2 CH_cbr_134 2 3 0.000647303
Carica papaya supercontig_23 2 CH_cpa_314 2 2 0.000285198
Gossypium raimondii Chr02 2 CH_gra_447 2 2 0.00080416
Lotus japonicus chr3 2 CH_lja_378 2 2 0.000429046
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_461 2 2 0.000308404
Malus domestica Chr09 2 CH_mdo_274 3 6 0.0000015096
Quercus lobata 8 2 CH_qlo_901 2 2 0.000309773

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001