Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-xylose biosynthesis.UDP-D-glucuronic acid decarboxylase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cannabis sativa NC_044371.1 1 CH_cansat_173 3 9 0.0000108591
Coffea canephora chr3 1 CH_ccan_212 2 2 0.0000638836
Cucumis sativus L. chr6 1 CH_csa_243 3 17 0.000248195
Punica granatum NC_045134.1 1 CH_pgr_370 2 2 0.000750356
Physcomitrium patens Chr10 1 CH_ppa_305 2 2 0.000612726
Pisum sativum chr6LG2 1 CH_psa_410 2 2 0.000782452
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_811 2 2 0.00083717
Sequoiadendron giganteum chr7 1 CH_sgi_1248 2 2 0.000292291
Vanilla planifolia CM028150.1 1 CH_vpl_51 5 54 0.00000017653
Cannabis sativa NC_044371.1 2 CH_cansat_173 3 9 0.0000108591
Coffea canephora chr3 2 CH_ccan_212 2 2 0.0000638836
Cucumis sativus L. chr6 2 CH_csa_243 3 17 0.000248195
Punica granatum NC_045134.1 2 CH_pgr_370 2 2 0.000750356
Physcomitrium patens Chr10 2 CH_ppa_305 2 2 0.000612726
Pisum sativum chr6LG2 2 CH_psa_410 2 2 0.000782452
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_811 2 2 0.00083717
Sequoiadendron giganteum chr7 2 CH_sgi_1248 2 2 0.000292291
Vanilla planifolia CM028150.1 2 CH_vpl_51 5 54 0.00000017653

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001