Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-glucuronic acid biosynthesis.UDP-D-glucose 6-dehydrogenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 1 CH_amhyb_246 2 2 0.000505051
Aquilegia oxysepala CHR01 1 CH_aox_302 2 2 0.000481193
Amborella trichopoda AmTr_v1.0_scaffold00016 1 CH_atr_259 2 2 0.000238322
Brassica carinata ChrC08 1 CH_bca_1175 2 2 0.000961939
Brassica carinata ChrB01 1 CH_bca_1176 2 2 0.000961939
Brassica carinata ChrB06 1 CH_bca_1177 2 2 0.000961939
Cucumis sativus L. chr6 1 CH_csa_170 3 10 0.0000125342
Marchantia polymorpha scaffold_108 1 CH_mpo_109 2 2 0.000331327
Nelumbo nucifera chr3 1 CH_nnu_415 2 2 0.000436015
Oryza sativa ssp. japonica chr12 1 CH_osa_369 2 2 0.000528123
Salvia bowleyana GWHASIU00000003 1 CH_sbo_384 2 2 0.000272988
Trochodendron aralioides group12 1 CH_tar_530 2 2 0.000600366
Tripterygium wilfordii NC_052235.1 1 CH_twi_291 2 2 0.000557507
Tripterygium wilfordii NC_052246.1 1 CH_twi_292 2 2 0.000557507
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 2 CH_amhyb_246 2 2 0.000505051
Aquilegia oxysepala CHR01 2 CH_aox_302 2 2 0.000481193
Amborella trichopoda AmTr_v1.0_scaffold00016 2 CH_atr_259 2 2 0.000238322
Brassica carinata ChrC08 2 CH_bca_1175 2 2 0.000961939
Brassica carinata ChrB01 2 CH_bca_1176 2 2 0.000961939
Brassica carinata ChrB06 2 CH_bca_1177 2 2 0.000961939
Cucumis sativus L. chr6 2 CH_csa_170 3 10 0.0000125342
Marchantia polymorpha scaffold_108 2 CH_mpo_109 2 2 0.000331327
Nelumbo nucifera chr3 2 CH_nnu_415 2 2 0.000436015
Oryza sativa ssp. japonica chr12 2 CH_osa_369 2 2 0.000528123
Salvia bowleyana GWHASIU00000003 2 CH_sbo_384 2 2 0.000272988
Trochodendron aralioides group12 2 CH_tar_530 2 2 0.000600366
Tripterygium wilfordii NC_052235.1 2 CH_twi_291 2 2 0.000557507
Tripterygium wilfordii NC_052246.1 2 CH_twi_292 2 2 0.000557507

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001