Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.fermentation.acetic acid biosynthesis.alcohol dehydrogenase (ADH)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_3008_HRSCAF_3015 1 CH_ama_146 2 2 0.000862218
Aquilegia oxysepala CHR05 1 CH_aox_177 2 2 0.0000801989
Amborella trichopoda AmTr_v1.0_scaffold00071 1 CH_atr_206 2 2 0.0000794407
Camellia sinensis var. sinensis Chr9 1 CH_camsi_50 6 21 0.00000000000000173195
Corylus avellana 7 1 CH_cav_100 3 5 0.0000000881698
Citrus clementina scaffold_5 1 CH_ccl_178 3 6 0.000000807351
Carpinus fangiana Cfa07 1 CH_cfa_37 4 4 0.00000000000130333
Carya illinoinensis Chr15 1 CH_cil_89 4 4 0.000000000000714457
Citrullus lanatus CG_Chr09 1 CH_cla_137 2 2 0.0000887115
Cucumis sativus L. chr7 1 CH_csa_46 4 5 0.00000000000872592
Daucus carota DCARv2_Chr8 1 CH_dca_441 2 2 0.000637775
Daucus carota DCARv2_Chr4 1 CH_dca_442 2 2 0.000637775
Davidia involucrata GWHABJS00000011 1 CH_din_525 2 4 0.00090015
Durio zibethinus NW_019167937.1 1 CH_dzi_110 3 4 0.000000451094
Durio zibethinus NW_019167893.1 1 CH_dzi_409 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_29 5 10 0.0000000000000076627
Erythranthe guttata scaffold_14 1 CH_egut_374 2 2 0.000218444
Fragaria x ananassa Fvb2-4 1 CH_fan_553 2 2 0.000518101
Fragaria x ananassa Fvb2-2 1 CH_fan_554 2 2 0.000518101
Fragaria x ananassa Fvb2-1 1 CH_fan_555 2 2 0.000518101
Fragaria vesca Fvb2 1 CH_fve_280 2 2 0.0000589102
Gossypium hirsutum D02 1 CH_ghi_178 4 8 0.00000000400011
Gossypium raimondii Chr05 1 CH_gra_96 4 8 0.00000000407517
Helianthus annuus HanXRQChr05 1 CH_han_118 4 5 0.0000000000302945
Lonicera japonica GWHAAZE00000004 1 CH_lonja_492 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_80 4 6 0.00000000000611125
Magnolia biondii Chr03 1 CH_mbi_230 3 7 0.00000247588
Malus domestica Chr10 1 CH_mdo_129 4 8 0.000000000801399
Manihot esculenta Chromosome18 1 CH_mes_126 4 8 0.00000000167295
Medicago truncatula chr3 1 CH_mtr_268 3 6 0.0000000506405
Nelumbo nucifera chr5 1 CH_nnu_299 3 22 0.0000877141
Oryza sativa ssp. japonica chr11 1 CH_osa_217 2 2 0.0000528123
Prunus persica Pp08 1 CH_ppe_114 4 6 0.000000000280168
Pisum sativum chr5LG3 1 CH_psa_28 5 17 0.000000000000343566
Populus trichocarpa Chr05 1 CH_ptr_222 3 4 0.00000112241
Populus trichocarpa Chr07 1 CH_ptr_97 4 4 0.0000000000405549
Quercus lobata CM012294 1 CH_qlo_299 4 5 0.00000000206603
Quercus lobata 11 1 CH_qlo_512 3 3 0.00000145542
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_94 5 15 0.000000000000341224
Rhododendron simsii chr11 1 CH_rsi_95 4 6 0.0000000000604607
Sequoiadendron giganteum chr1 1 CH_sgi_176 6 15 0.000000000000014261
Sequoiadendron giganteum chr1 1 CH_sgi_311 4 4 0.000000000114461
Selenicereus undatus Scaffold_33675 1 CH_sun_213 2 2 0.000217992
Theobroma cacao Chromosome_8 1 CH_tca_221 3 6 0.00000321731
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_140 4 25 0.00000106238
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_188 3 8 0.000025364
Vitis vinifera chr4 1 CH_vvi_76 4 4 0.0000000000198053
Avicennia marina ScioBoG_3008_HRSCAF_3015 2 CH_ama_146 2 2 0.000862218
Aquilegia oxysepala CHR05 2 CH_aox_177 2 2 0.0000801989
Amborella trichopoda AmTr_v1.0_scaffold00071 2 CH_atr_206 2 2 0.0000794407
Camellia sinensis var. sinensis Chr9 2 CH_camsi_50 6 21 0.00000000000000173195
Corylus avellana 7 2 CH_cav_100 3 5 0.0000000881698
Citrus clementina scaffold_5 2 CH_ccl_178 3 6 0.000000807351
Carpinus fangiana Cfa07 2 CH_cfa_37 4 4 0.00000000000130333
Carya illinoinensis Chr15 2 CH_cil_89 4 4 0.000000000000714457
Citrullus lanatus CG_Chr09 2 CH_cla_137 2 2 0.0000887115
Cucumis sativus L. chr7 2 CH_csa_46 4 5 0.00000000000872592
Daucus carota DCARv2_Chr8 2 CH_dca_441 2 2 0.000637775
Daucus carota DCARv2_Chr4 2 CH_dca_442 2 2 0.000637775
Davidia involucrata GWHABJS00000011 2 CH_din_525 2 4 0.00090015
Durio zibethinus NW_019167937.1 2 CH_dzi_110 3 4 0.000000451094
Durio zibethinus NW_019167893.1 2 CH_dzi_409 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_29 5 10 0.0000000000000076627
Eucalyptus grandis Chr08 2 CH_egr_451 3 3 0.000000102767
Erythranthe guttata scaffold_14 2 CH_egut_374 2 2 0.000218444
Fragaria x ananassa Fvb2-4 2 CH_fan_553 2 2 0.000518101
Fragaria x ananassa Fvb2-2 2 CH_fan_554 2 2 0.000518101
Fragaria x ananassa Fvb2-1 2 CH_fan_555 2 2 0.000518101
Fragaria vesca Fvb2 2 CH_fve_280 2 2 0.0000589102
Gossypium hirsutum D02 2 CH_ghi_178 4 8 0.00000000400011
Gossypium raimondii Chr05 2 CH_gra_96 4 8 0.00000000407517
Helianthus annuus HanXRQChr05 2 CH_han_118 4 5 0.0000000000302945
Lonicera japonica GWHAAZE00000004 2 CH_lonja_492 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_80 4 6 0.00000000000611125
Magnolia biondii Chr03 2 CH_mbi_230 3 7 0.00000247588
Malus domestica Chr10 2 CH_mdo_129 4 8 0.000000000801399
Manihot esculenta Chromosome18 2 CH_mes_126 4 8 0.00000000167295
Nelumbo nucifera chr5 2 CH_nnu_299 3 22 0.0000877141
Oryza sativa ssp. japonica chr11 2 CH_osa_217 2 2 0.0000528123
Prunus persica Pp08 2 CH_ppe_114 4 6 0.000000000280168
Pisum sativum chr5LG3 2 CH_psa_28 5 17 0.000000000000343566
Populus trichocarpa Chr05 2 CH_ptr_222 3 4 0.00000112241
Populus trichocarpa Chr07 2 CH_ptr_97 4 4 0.0000000000405549
Quercus lobata CM012294 2 CH_qlo_299 4 5 0.00000000206603
Quercus lobata 11 2 CH_qlo_512 3 3 0.00000145542
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_94 5 15 0.000000000000341224
Rhododendron simsii chr11 2 CH_rsi_95 4 6 0.0000000000604607
Sequoiadendron giganteum chr1 2 CH_sgi_176 6 15 0.000000000000014261
Sequoiadendron giganteum chr1 2 CH_sgi_311 4 4 0.000000000114461
Selenicereus undatus Scaffold_33675 2 CH_sun_213 2 2 0.000217992
Theobroma cacao Chromosome_8 2 CH_tca_221 3 6 0.00000321731
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_140 4 25 0.00000106238
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_188 3 8 0.000025364
Vitis vinifera chr4 2 CH_vvi_76 4 4 0.0000000000198053

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001