Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.sucrose metabolism.degradation.invertase activities.acid beta-fructofuranosidase (CWIN)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_171 3 5 0.000000745369
Arabidopsis lyrata scaffold_3 1 CH_aly_452 2 2 0.000990066
Avicennia marina ScioBoG_102839_HRSCAF_103093 1 CH_ama_92 2 2 0.000258665
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 1 CH_amhyb_139 2 2 0.0000841751
Camellia sinensis var. sinensis Chr15 1 CH_camsi_112 4 4 0.0000000000202489
Camellia sinensis var. sinensis Chr4 1 CH_camsi_340 3 4 0.000000706432
Cannabis sativa NC_044370.1 1 CH_cansat_97 4 11 0.0000000196039
Capsicum annuum PGAv.1.6.scaffold397 1 CH_can_444 2 2 0.000826105
Capsicum annuum PGAv.1.6.scaffold1069 1 CH_can_445 2 2 0.000826105
Corylus avellana 11 1 CH_cav_166 3 7 0.00000308499
Coffea canephora chr8 1 CH_ccan_140 3 37 0.00000623086
Citrus clementina scaffold_7 1 CH_ccl_140 3 3 0.000000100941
Ceratophyllum demersum 2 1 CH_cde_231 2 2 0.000473878
Ceratophyllum demersum 10 1 CH_cde_232 2 2 0.000473878
Carya illinoinensis Chr01 1 CH_cil_485 2 2 0.000371897
Cucumis melo chr01 1 CH_cme_277 2 2 0.000400267
Chenopodium quinoa C_Quinoa_Scaffold_2493 1 CH_cqu_83 4 5 0.000000000335062
Daucus carota DCARv2_Chr4 1 CH_dca_473 2 2 0.000956663
Durio zibethinus NW_019168481.1 1 CH_dzi_358 2 2 0.000695233
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_226 3 7 0.0000126783
Erythranthe guttata scaffold_10 1 CH_egut_157 3 3 0.0000000795325
Fragaria vesca Fvb6 1 CH_fve_290 3 28 0.0000681284
Helianthus annuus HanXRQChr17 1 CH_han_328 3 3 0.00000344952
Helianthus annuus HanXRQChr13 1 CH_han_380 3 4 0.000013794
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_60 5 7 0.000000000000870553
Manihot esculenta Chromosome08 1 CH_mes_494 2 2 0.000915947
Medicago truncatula chr1 1 CH_mtr_412 3 7 0.00000496114
Nelumbo nucifera chr8 1 CH_nnu_366 2 2 0.000261609
Oryza sativa ssp. japonica chr04 1 CH_osa_387 2 2 0.000792184
Punica granatum NC_045132.1 1 CH_pgr_92 3 3 0.0000000337834
Prunus persica Pp07 1 CH_ppe_176 3 3 0.0000000834721
Papaver somniferum NC_039367.1 1 CH_pso_60 6 12 0.0000000000000213193
Papaver somniferum NC_039366.1 1 CH_pso_70 5 5 0.000000000000102555
Papaver somniferum NC_039364.1 1 CH_pso_72 6 15 0.000000000000115412
Papaver somniferum NC_039368.1 1 CH_pso_84 6 19 0.00000000000062516
Populus trichocarpa Chr16 1 CH_ptr_502 2 2 0.000578001
Populus trichocarpa Chr06 1 CH_ptr_503 2 2 0.000578001
Phaseolus vulgaris Chr01 1 CH_pvu_167 3 3 0.000000453468
Quercus lobata 5 1 CH_qlo_272 5 24 0.000000000569425
Quercus lobata CM012294 1 CH_qlo_462 3 3 0.00000047981
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_664 2 2 0.000239192
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_787 2 3 0.000717541
Rhododendron simsii chr11 1 CH_rsi_492 2 2 0.000387184
Salix brachista GWHAAZH00000016 1 CH_sbr_309 3 29 0.000217199
Simmondsia chinensis GWHAASQ00000015 1 CH_sci_222 2 2 0.000255428
Schrenkiella parvula ch3-1 1 CH_spa_292 2 2 0.00078734
Solanum pennellii Spenn-ch10 1 CH_spe_496 3 26 0.000646312
Selenicereus undatus Scaffold_33675 1 CH_sun_240 2 2 0.000435983
Utricularia gibba unitig_32 1 CH_ugi_256 2 2 0.000440755
Vigna mungo CM024073.1 1 CH_vmu_109 3 3 0.00000035071
Vanilla planifolia CM028153.1 1 CH_vpl_138 3 18 0.0000667334
Zea mays 10 1 CH_zma_280 2 2 0.000766969
Acer truncatum chr1 2 CH_acertr_171 3 5 0.000000745369
Arabidopsis lyrata scaffold_3 2 CH_aly_452 2 2 0.000990066
Avicennia marina ScioBoG_102839_HRSCAF_103093 2 CH_ama_92 2 2 0.000258665
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 2 CH_amhyb_139 2 2 0.0000841751
Camellia sinensis var. sinensis Chr15 2 CH_camsi_112 4 4 0.0000000000202489
Camellia sinensis var. sinensis Chr4 2 CH_camsi_340 3 4 0.000000706432
Cannabis sativa NC_044370.1 2 CH_cansat_97 4 11 0.0000000196039
Capsicum annuum PGAv.1.6.scaffold397 2 CH_can_444 2 2 0.000826105
Capsicum annuum PGAv.1.6.scaffold1069 2 CH_can_445 2 2 0.000826105
Corylus avellana 11 2 CH_cav_166 3 7 0.00000308499
Coffea canephora chr8 2 CH_ccan_140 3 37 0.00000623086
Citrus clementina scaffold_7 2 CH_ccl_140 3 3 0.000000100941
Ceratophyllum demersum 2 2 CH_cde_231 2 2 0.000473878
Ceratophyllum demersum 10 2 CH_cde_232 2 2 0.000473878
Carya illinoinensis Chr01 2 CH_cil_485 2 2 0.000371897
Cucumis melo chr01 2 CH_cme_277 2 2 0.000400267
Chenopodium quinoa C_Quinoa_Scaffold_2493 2 CH_cqu_83 4 5 0.000000000335062
Daucus carota DCARv2_Chr4 2 CH_dca_473 2 2 0.000956663
Durio zibethinus NW_019168481.1 2 CH_dzi_358 2 2 0.000695233
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_226 3 7 0.0000126783
Eucalyptus grandis Chr03 2 CH_egr_897 2 2 0.000585274
Eucalyptus grandis Chr06 2 CH_egr_898 2 2 0.000585274
Erythranthe guttata scaffold_10 2 CH_egut_157 3 3 0.0000000795325
Fragaria vesca Fvb6 2 CH_fve_290 3 28 0.0000681284
Helianthus annuus HanXRQChr17 2 CH_han_328 3 3 0.00000344952
Helianthus annuus HanXRQChr13 2 CH_han_380 3 4 0.000013794
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_60 5 7 0.000000000000870553
Manihot esculenta Chromosome08 2 CH_mes_494 2 2 0.000915947
Nelumbo nucifera chr8 2 CH_nnu_366 2 2 0.000261609
Oryza sativa ssp. japonica chr04 2 CH_osa_387 2 2 0.000792184
Punica granatum NC_045132.1 2 CH_pgr_92 3 3 0.0000000337834
Prunus persica Pp07 2 CH_ppe_176 3 3 0.0000000834721
Papaver somniferum NC_039367.1 2 CH_pso_60 6 12 0.0000000000000213193
Papaver somniferum NC_039366.1 2 CH_pso_70 5 5 0.000000000000102555
Papaver somniferum NC_039364.1 2 CH_pso_72 6 15 0.000000000000115412
Papaver somniferum NC_039368.1 2 CH_pso_84 6 19 0.00000000000062516
Populus trichocarpa Chr16 2 CH_ptr_502 2 2 0.000578001
Populus trichocarpa Chr06 2 CH_ptr_503 2 2 0.000578001
Phaseolus vulgaris Chr01 2 CH_pvu_167 3 3 0.000000453468
Quercus lobata 5 2 CH_qlo_272 5 24 0.000000000569425
Quercus lobata CM012294 2 CH_qlo_462 3 3 0.00000047981
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_664 2 2 0.000239192
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_787 2 3 0.000717541
Rhododendron simsii chr11 2 CH_rsi_492 2 2 0.000387184
Salix brachista GWHAAZH00000016 2 CH_sbr_309 3 29 0.000217199
Simmondsia chinensis GWHAASQ00000015 2 CH_sci_222 2 2 0.000255428
Schrenkiella parvula ch3-1 2 CH_spa_292 2 2 0.00078734
Solanum pennellii Spenn-ch10 2 CH_spe_496 3 26 0.000646312
Selenicereus undatus Scaffold_33675 2 CH_sun_240 2 2 0.000435983
Utricularia gibba unitig_32 2 CH_ugi_256 2 2 0.000440755
Vigna mungo CM024073.1 2 CH_vmu_109 3 3 0.00000035071
Vanilla planifolia CM028153.1 2 CH_vpl_138 3 18 0.0000667334
Zea mays 10 2 CH_zma_280 2 2 0.000766969

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001