Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.post-Golgi trafficking.coat protein recruiting.ARF-GTPase guanyl-nucleotide exchange.ARF-GEF factor (GBF)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr7 1 CH_acertr_495 2 2 0.000422982
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_735 2 2 0.000838273
Cannabis sativa NC_044371.1 1 CH_cansat_292 2 2 0.000196993
Cicer arietinum L. Ca_LG3_v3 1 CH_car_269 2 2 0.000466981
Carica papaya supercontig_14 1 CH_cpa_340 2 2 0.000570396
Davidia involucrata GWHABJS00000003 1 CH_din_467 2 2 0.000500125
Fragaria vesca Fvb7 1 CH_fve_393 2 2 0.000353461
Glycine max Gm11 1 CH_gma_600 2 2 0.00079707
Glycine max Gm18 1 CH_gma_601 2 2 0.00079707
Lupinus albus Lalb_Chr04 1 CH_lal_358 2 2 0.000524824
Malus domestica Chr01 1 CH_mdo_642 2 2 0.000379212
Malus domestica Chr07 1 CH_mdo_643 2 2 0.000379212
Prunus persica Pp02 1 CH_ppe_408 2 2 0.000223789
Populus trichocarpa Chr17 1 CH_ptr_373 2 2 0.0001734
Phaseolus vulgaris Chr01 1 CH_pvu_407 2 2 0.000440836
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_586 2 2 0.000119596
Salix brachista GWHAAZH00000017 1 CH_sbr_283 2 2 0.000189042
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_421 2 2 0.000929238
Vigna mungo CM024070.1 1 CH_vmu_339 2 2 0.000387685
Acer truncatum chr7 2 CH_acertr_495 2 2 0.000422982
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_735 2 2 0.000838273
Cannabis sativa NC_044371.1 2 CH_cansat_292 2 2 0.000196993
Cicer arietinum L. Ca_LG3_v3 2 CH_car_269 2 2 0.000466981
Carica papaya supercontig_14 2 CH_cpa_340 2 2 0.000570396
Davidia involucrata GWHABJS00000003 2 CH_din_467 2 2 0.000500125
Fragaria vesca Fvb7 2 CH_fve_393 2 2 0.000353461
Glycine max Gm11 2 CH_gma_600 2 2 0.00079707
Glycine max Gm18 2 CH_gma_601 2 2 0.00079707
Lupinus albus Lalb_Chr04 2 CH_lal_358 2 2 0.000524824
Lotus japonicus chr6 2 CH_lja_407 2 2 0.000715077
Lotus japonicus Contig00141 2 CH_lja_408 2 2 0.000715077
Malus domestica Chr01 2 CH_mdo_642 2 2 0.000379212
Malus domestica Chr07 2 CH_mdo_643 2 2 0.000379212
Prunus persica Pp02 2 CH_ppe_408 2 2 0.000223789
Populus trichocarpa Chr17 2 CH_ptr_373 2 2 0.0001734
Phaseolus vulgaris Chr01 2 CH_pvu_407 2 2 0.000440836
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_586 2 2 0.000119596
Salix brachista GWHAAZH00000017 2 CH_sbr_283 2 2 0.000189042
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_421 2 2 0.000929238
Vigna mungo CM024070.1 2 CH_vmu_339 2 2 0.000387685

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001