Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.Golgi-ER retrograde trafficking.vesicle tethering.COG tethering complex.component COG3

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr2 1 CH_camsi_279 3 4 0.000000126155
Citrullus lanatus CG_Chr08 1 CH_cla_191 2 4 0.000532222
Lonicera japonica GWHAAZE00000006 1 CH_lonja_409 3 28 0.0000704061
Nicotiana tabacum Nitab4.5_0000055 1 CH_nta_102 2 2 0.000109727
Quercus lobata CM012294 1 CH_qlo_458 3 10 0.000000479723
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_354 3 17 0.0000016206
Sequoiadendron giganteum chr3 1 CH_sgi_224 4 4 0.000000000000346852
Solanum lycopersicum SL4.0ch07 1 CH_sly_411 2 2 0.000176082
Trochodendron aralioides group10 1 CH_tar_100 3 3 0.000000021627
Camellia sinensis var. sinensis Chr2 2 CH_camsi_279 3 4 0.000000126155
Citrullus lanatus CG_Chr08 2 CH_cla_191 2 4 0.000532222
Lonicera japonica GWHAAZE00000006 2 CH_lonja_409 3 28 0.0000704061
Nicotiana tabacum Nitab4.5_0000055 2 CH_nta_102 2 2 0.000109727
Quercus lobata CM012294 2 CH_qlo_458 3 10 0.000000479723
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_354 3 17 0.0000016206
Sequoiadendron giganteum chr3 2 CH_sgi_224 4 4 0.000000000000346852
Solanum lycopersicum SL4.0ch07 2 CH_sly_411 2 2 0.000176082
Trochodendron aralioides group10 2 CH_tar_100 3 3 0.000000021627

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001