Functional clusters
Information
- Type MapMan
- Description Vesicle trafficking.Golgi-ER retrograde trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.subunit alpha
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_4 | 1 | CH_aly_307 | 2 | 2 | 0.000198013 |
Brassica rapa | A06 | 1 | CH_bra_370 | 2 | 3 | 0.000772726 |
Camellia sinensis var. sinensis | Chr3 | 1 | CH_camsi_537 | 2 | 2 | 0.0000458547 |
Citrullus lanatus | CG_Chr11 | 1 | CH_cla_212 | 2 | 3 | 0.000798344 |
Cucumis melo | chr11 | 1 | CH_cme_234 | 2 | 2 | 0.000200133 |
Carica papaya | supercontig_139 | 1 | CH_cpa_208 | 2 | 2 | 0.0000950661 |
Cucumis sativus L. | chr2 | 1 | CH_csa_259 | 2 | 2 | 0.000250428 |
Durio zibethinus | NW_019167915.1 | 1 | CH_dzi_282 | 2 | 2 | 0.000278093 |
Gossypium raimondii | Chr05 | 1 | CH_gra_412 | 2 | 2 | 0.000536107 |
Gossypium raimondii | Chr08 | 1 | CH_gra_413 | 2 | 2 | 0.000536107 |
Helianthus annuus | HanXRQChr04 | 1 | CH_han_573 | 2 | 2 | 0.000231857 |
Lupinus albus | Lalb_Chr18 | 1 | CH_lal_356 | 2 | 2 | 0.000524824 |
Oryza sativa ssp. japonica | chr03 | 1 | CH_osa_347 | 2 | 4 | 0.000475289 |
Striga asiatica | scaffold201 | 1 | CH_sas_131 | 2 | 3 | 0.000562805 |
Theobroma cacao | Chromosome_2 | 1 | CH_tca_345 | 2 | 2 | 0.000219716 |
Arabidopsis lyrata | scaffold_4 | 2 | CH_aly_307 | 2 | 2 | 0.000198013 |
Brassica rapa | A06 | 2 | CH_bra_370 | 2 | 3 | 0.000772726 |
Camellia sinensis var. sinensis | Chr3 | 2 | CH_camsi_537 | 2 | 2 | 0.0000458547 |
Citrullus lanatus | CG_Chr11 | 2 | CH_cla_212 | 2 | 3 | 0.000798344 |
Cucumis melo | chr11 | 2 | CH_cme_234 | 2 | 2 | 0.000200133 |
Carica papaya | supercontig_139 | 2 | CH_cpa_208 | 2 | 2 | 0.0000950661 |
Cucumis sativus L. | chr2 | 2 | CH_csa_259 | 2 | 2 | 0.000250428 |
Durio zibethinus | NW_019167915.1 | 2 | CH_dzi_282 | 2 | 2 | 0.000278093 |
Eucalyptus grandis | Chr07 | 2 | CH_egr_461 | 3 | 7 | 0.000000179821 |
Gossypium raimondii | Chr05 | 2 | CH_gra_412 | 2 | 2 | 0.000536107 |
Gossypium raimondii | Chr08 | 2 | CH_gra_413 | 2 | 2 | 0.000536107 |
Helianthus annuus | HanXRQChr04 | 2 | CH_han_573 | 2 | 2 | 0.000231857 |
Lupinus albus | Lalb_Chr18 | 2 | CH_lal_356 | 2 | 2 | 0.000524824 |
Oryza sativa ssp. japonica | chr03 | 2 | CH_osa_347 | 2 | 4 | 0.000475289 |
Striga asiatica | scaffold201 | 2 | CH_sas_131 | 2 | 3 | 0.000562805 |
Theobroma cacao | Chromosome_2 | 2 | CH_tca_345 | 2 | 2 | 0.000219716 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |