Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.ER export trafficking.Coat protein II (COPII) coatomer machinery.coat protein recruiting.Sar1-GTPase-regulating protein (Sec16)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 1 CH_aar_203 2 2 0.000273698
Actinidia chinensis Lachesis_group14 1 CH_ach_43 3 3 0.000000371811
Arabidopsis lyrata scaffold_8 1 CH_aly_118 3 6 0.000000130689
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 1 CH_arhy_660 2 4 0.000538863
Arabidopsis thaliana Chr5 1 CH_ath_219 2 2 0.0000286492
Brassica carinata ChrC04 1 CH_bca_1053 2 3 0.000641272
Brassica oleracea C9 1 CH_bol_274 2 2 0.0000980584
Camellia sinensis var. sinensis Chr6 1 CH_camsi_978 2 2 0.000962949
Capsicum annuum PGAv.1.6.scaffold1227 1 CH_can_382 2 4 0.000495622
Cardamine hirsuta Chr6 1 CH_chi_104 3 3 0.0000000286668
Carica papaya supercontig_29 1 CH_cpa_207 2 2 0.0000950661
Capsella rubella scaffold_8 1 CH_cru_261 2 2 0.0000731154
Glycine max Gm11 1 CH_gma_436 2 2 0.000227734
Glycine max Gm01 1 CH_gma_437 2 2 0.000227734
Gossypium raimondii Chr01 1 CH_gra_350 2 2 0.000321664
Helianthus annuus HanXRQChr16 1 CH_han_572 2 2 0.000231857
Lupinus albus Lalb_Chr09 1 CH_lal_310 2 2 0.000314895
Nicotiana tabacum Nitab4.5_0000712 1 CH_nta_47 3 5 0.000000722306
Physcomitrium patens Chr04 1 CH_ppa_157 2 2 0.000183818
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_261 3 5 0.0000000953496
Sequoiadendron giganteum chr2 1 CH_sgi_1095 2 2 0.000146145
Solanum lycopersicum SL4.0ch08 1 CH_sly_391 2 3 0.000176077
Selaginella moellendorffii scaffold_17 1 CH_smo_13 8 25 0.0000000000000646076
Selaginella moellendorffii scaffold_27 1 CH_smo_2 15 40 4.55029e-31
Schrenkiella parvula ch2-4 1 CH_spa_66 3 3 0.00000000929892
Solanum pennellii Spenn-ch08 1 CH_spe_338 2 3 0.000133434
Solanum tuberosum ST4.03ch01 1 CH_stu_632 2 3 0.00092236
Vanilla planifolia CM028151.1 1 CH_vpl_43 4 39 0.0000000994192
Aethionema arabicum LG-2 2 CH_aar_203 2 2 0.000273698
Actinidia chinensis Lachesis_group14 2 CH_ach_43 3 3 0.000000371811
Arabidopsis lyrata scaffold_8 2 CH_aly_118 3 6 0.000000130689
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 2 CH_arhy_660 2 4 0.000538863
Arabidopsis thaliana Chr5 2 CH_ath_219 2 2 0.0000286492
Brassica carinata ChrC04 2 CH_bca_1053 2 3 0.000641272
Brassica oleracea C9 2 CH_bol_274 2 2 0.0000980584
Camellia sinensis var. sinensis Chr6 2 CH_camsi_978 2 2 0.000962949
Capsicum annuum PGAv.1.6.scaffold1227 2 CH_can_382 2 4 0.000495622
Cardamine hirsuta Chr6 2 CH_chi_104 3 3 0.0000000286668
Carica papaya supercontig_29 2 CH_cpa_207 2 2 0.0000950661
Capsella rubella scaffold_8 2 CH_cru_261 2 2 0.0000731154
Glycine max Gm11 2 CH_gma_436 2 2 0.000227734
Glycine max Gm01 2 CH_gma_437 2 2 0.000227734
Gossypium raimondii Chr01 2 CH_gra_350 2 2 0.000321664
Helianthus annuus HanXRQChr16 2 CH_han_572 2 2 0.000231857
Lupinus albus Lalb_Chr09 2 CH_lal_310 2 2 0.000314895
Nicotiana tabacum Nitab4.5_0000712 2 CH_nta_47 3 5 0.000000722306
Physcomitrium patens Chr04 2 CH_ppa_157 2 2 0.000183818
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_261 3 5 0.0000000953496
Sequoiadendron giganteum chr2 2 CH_sgi_1095 2 2 0.000146145
Solanum lycopersicum SL4.0ch08 2 CH_sly_391 2 3 0.000176077
Selaginella moellendorffii scaffold_17 2 CH_smo_13 8 25 0.0000000000000646076
Selaginella moellendorffii scaffold_27 2 CH_smo_2 15 40 4.55029e-31
Schrenkiella parvula ch2-4 2 CH_spa_66 3 3 0.00000000929892
Solanum pennellii Spenn-ch08 2 CH_spe_338 2 3 0.000133434
Solanum tuberosum ST4.03ch01 2 CH_stu_632 2 3 0.00092236
Vanilla planifolia CM028151.1 2 CH_vpl_43 4 39 0.0000000994192

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001