Functional clusters
Information
- Type MapMan
- Description Vesicle trafficking.ER export trafficking.Coat protein II (COPII) coatomer machinery.coat protein recruiting.small GTPase (Sar1)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Anthoceros agrestis | Sc2ySwM_368 | 1 | CH_aag_99 | 2 | 2 | 0.0000802568 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 1 | CH_arhy_732 | 2 | 2 | 0.000838273 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 1 | CH_arhy_733 | 2 | 2 | 0.000838273 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 1 | CH_arhy_734 | 2 | 2 | 0.000838273 |
Cannabis sativa | NC_044376.1 | 1 | CH_cansat_337 | 2 | 2 | 0.000393985 |
Corylus avellana | 1 | 1 | CH_cav_415 | 2 | 2 | 0.000460017 |
Carpinus fangiana | Cfa06 | 1 | CH_cfa_346 | 2 | 2 | 0.000454408 |
Chenopodium quinoa | C_Quinoa_Scaffold_2159 | 1 | CH_cqu_612 | 2 | 2 | 0.000995025 |
Eucalyptus grandis | Chr01 | 1 | CH_egr_3 | 18 | 21 | 3.38875e-52 |
Fragaria vesca | Fvb4 | 1 | CH_fve_131 | 3 | 3 | 0.0000000520576 |
Malus domestica | Chr16 | 1 | CH_mdo_680 | 2 | 2 | 0.000568817 |
Punica granatum | NC_045127.1 | 1 | CH_pgr_346 | 2 | 4 | 0.000675279 |
Prunus persica | Pp01 | 1 | CH_ppe_454 | 2 | 2 | 0.000447577 |
Populus trichocarpa | Chr13 | 1 | CH_ptr_539 | 2 | 2 | 0.000867002 |
Populus trichocarpa | Chr05 | 1 | CH_ptr_540 | 2 | 2 | 0.000867002 |
Phaseolus vulgaris | Chr03 | 1 | CH_pvu_406 | 2 | 2 | 0.000440836 |
Quercus lobata | 3 | 1 | CH_qlo_194 | 5 | 12 | 0.00000000000236232 |
Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_258 | 4 | 19 | 0.0000000926906 |
Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_287 | 3 | 3 | 0.000000200248 |
Selenicereus undatus | Scaffold_33679 | 1 | CH_sun_275 | 2 | 2 | 0.000726639 |
Theobroma cacao | Chromosome_4 | 1 | CH_tca_393 | 2 | 2 | 0.000439432 |
Anthoceros agrestis | Sc2ySwM_368 | 2 | CH_aag_99 | 2 | 2 | 0.0000802568 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 2 | CH_arhy_732 | 2 | 2 | 0.000838273 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 2 | CH_arhy_733 | 2 | 2 | 0.000838273 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 2 | CH_arhy_734 | 2 | 2 | 0.000838273 |
Cannabis sativa | NC_044376.1 | 2 | CH_cansat_337 | 2 | 2 | 0.000393985 |
Corylus avellana | 1 | 2 | CH_cav_415 | 2 | 2 | 0.000460017 |
Carpinus fangiana | Cfa06 | 2 | CH_cfa_346 | 2 | 2 | 0.000454408 |
Chenopodium quinoa | C_Quinoa_Scaffold_2159 | 2 | CH_cqu_612 | 2 | 2 | 0.000995025 |
Eucalyptus grandis | Chr01 | 2 | CH_egr_3 | 18 | 21 | 3.38875e-52 |
Fragaria vesca | Fvb4 | 2 | CH_fve_131 | 3 | 3 | 0.0000000520576 |
Malus domestica | Chr16 | 2 | CH_mdo_680 | 2 | 2 | 0.000568817 |
Punica granatum | NC_045127.1 | 2 | CH_pgr_346 | 2 | 4 | 0.000675279 |
Prunus persica | Pp01 | 2 | CH_ppe_454 | 2 | 2 | 0.000447577 |
Populus trichocarpa | Chr13 | 2 | CH_ptr_539 | 2 | 2 | 0.000867002 |
Populus trichocarpa | Chr05 | 2 | CH_ptr_540 | 2 | 2 | 0.000867002 |
Phaseolus vulgaris | Chr03 | 2 | CH_pvu_406 | 2 | 2 | 0.000440836 |
Quercus lobata | 3 | 2 | CH_qlo_194 | 5 | 12 | 0.00000000000236232 |
Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_258 | 4 | 19 | 0.0000000926906 |
Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_287 | 3 | 3 | 0.000000200248 |
Selenicereus undatus | Scaffold_33679 | 2 | CH_sun_275 | 2 | 2 | 0.000726639 |
Theobroma cacao | Chromosome_4 | 2 | CH_tca_393 | 2 | 2 | 0.000439432 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |