Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.ER export trafficking.Coat protein II (COPII) coatomer machinery.coat protein recruiting.small GTPase (Sar1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_368 1 CH_aag_99 2 2 0.0000802568
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 1 CH_arhy_732 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 1 CH_arhy_733 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 1 CH_arhy_734 2 2 0.000838273
Cannabis sativa NC_044376.1 1 CH_cansat_337 2 2 0.000393985
Corylus avellana 1 1 CH_cav_415 2 2 0.000460017
Carpinus fangiana Cfa06 1 CH_cfa_346 2 2 0.000454408
Chenopodium quinoa C_Quinoa_Scaffold_2159 1 CH_cqu_612 2 2 0.000995025
Eucalyptus grandis Chr01 1 CH_egr_3 18 21 3.38875e-52
Fragaria vesca Fvb4 1 CH_fve_131 3 3 0.0000000520576
Malus domestica Chr16 1 CH_mdo_680 2 2 0.000568817
Punica granatum NC_045127.1 1 CH_pgr_346 2 4 0.000675279
Prunus persica Pp01 1 CH_ppe_454 2 2 0.000447577
Populus trichocarpa Chr13 1 CH_ptr_539 2 2 0.000867002
Populus trichocarpa Chr05 1 CH_ptr_540 2 2 0.000867002
Phaseolus vulgaris Chr03 1 CH_pvu_406 2 2 0.000440836
Quercus lobata 3 1 CH_qlo_194 5 12 0.00000000000236232
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_258 4 19 0.0000000926906
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_287 3 3 0.000000200248
Selenicereus undatus Scaffold_33679 1 CH_sun_275 2 2 0.000726639
Theobroma cacao Chromosome_4 1 CH_tca_393 2 2 0.000439432
Anthoceros agrestis Sc2ySwM_368 2 CH_aag_99 2 2 0.0000802568
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 2 CH_arhy_732 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 2 CH_arhy_733 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 2 CH_arhy_734 2 2 0.000838273
Cannabis sativa NC_044376.1 2 CH_cansat_337 2 2 0.000393985
Corylus avellana 1 2 CH_cav_415 2 2 0.000460017
Carpinus fangiana Cfa06 2 CH_cfa_346 2 2 0.000454408
Chenopodium quinoa C_Quinoa_Scaffold_2159 2 CH_cqu_612 2 2 0.000995025
Eucalyptus grandis Chr01 2 CH_egr_3 18 21 3.38875e-52
Fragaria vesca Fvb4 2 CH_fve_131 3 3 0.0000000520576
Malus domestica Chr16 2 CH_mdo_680 2 2 0.000568817
Punica granatum NC_045127.1 2 CH_pgr_346 2 4 0.000675279
Prunus persica Pp01 2 CH_ppe_454 2 2 0.000447577
Populus trichocarpa Chr13 2 CH_ptr_539 2 2 0.000867002
Populus trichocarpa Chr05 2 CH_ptr_540 2 2 0.000867002
Phaseolus vulgaris Chr03 2 CH_pvu_406 2 2 0.000440836
Quercus lobata 3 2 CH_qlo_194 5 12 0.00000000000236232
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_258 4 19 0.0000000926906
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_287 3 3 0.000000200248
Selenicereus undatus Scaffold_33679 2 CH_sun_275 2 2 0.000726639
Theobroma cacao Chromosome_4 2 CH_tca_393 2 2 0.000439432

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001