Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.ER export trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.scaffolding component Sec31

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 1 CH_aag_98 2 2 0.0000802568
Amborella trichopoda AmTr_v1.0_scaffold00111 1 CH_atr_64 3 3 0.00000000946662
Brassica rapa A09 1 CH_bra_265 2 2 0.000257588
Corylus avellana 1 1 CH_cav_87 3 4 0.0000000352693
Carica papaya supercontig_125 1 CH_cpa_206 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_3674 1 CH_cqu_362 2 2 0.000142146
Fragaria x ananassa Fvb7-2 1 CH_fan_607 2 3 0.000832634
Fragaria x ananassa Fvb7-1 1 CH_fan_608 2 3 0.000832634
Fragaria vesca Fvb7 1 CH_fve_321 2 3 0.000176725
Lonicera japonica GWHAAZE00000009 1 CH_lonja_462 2 2 0.000179662
Rhododendron simsii chr07 1 CH_rsi_300 3 11 0.0000205962
Trochodendron aralioides group2 1 CH_tar_430 2 2 0.00036022
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_72 4 8 0.0000000300324
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_366 2 2 0.000557543
Vanilla planifolia CM028150.1 1 CH_vpl_170 2 2 0.000073888
Anthoceros agrestis Sc2ySwM_117 2 CH_aag_98 2 2 0.0000802568
Amborella trichopoda AmTr_v1.0_scaffold00111 2 CH_atr_64 3 3 0.00000000946662
Brassica rapa A09 2 CH_bra_265 2 2 0.000257588
Corylus avellana 1 2 CH_cav_87 3 4 0.0000000352693
Carica papaya supercontig_125 2 CH_cpa_206 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_3674 2 CH_cqu_362 2 2 0.000142146
Fragaria x ananassa Fvb7-2 2 CH_fan_607 2 3 0.000832634
Fragaria x ananassa Fvb7-1 2 CH_fan_608 2 3 0.000832634
Fragaria vesca Fvb7 2 CH_fve_321 2 3 0.000176725
Lonicera japonica GWHAAZE00000009 2 CH_lonja_462 2 2 0.000179662
Rhododendron simsii chr07 2 CH_rsi_300 3 11 0.0000205962
Trochodendron aralioides group2 2 CH_tar_430 2 2 0.00036022
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_72 4 8 0.0000000300324
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_366 2 2 0.000557543
Vanilla planifolia CM028150.1 2 CH_vpl_170 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001