Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cutin and suberin.cutin polyester biosynthesis.cutin synthase (CD)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr2 1 CH_acertr_564 2 2 0.00070497
Actinidia chinensis Lachesis_group22 1 CH_ach_94 2 2 0.0000543213
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_153 4 4 0.000000000246346
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 1 CH_arhy_288 3 3 0.00000109709
Camellia sinensis var. sinensis Chr1 1 CH_camsi_739 2 2 0.000275128
Cannabis sativa NC_044375.1 1 CH_cansat_235 2 2 0.0000656642
Corylus avellana 2 1 CH_cav_332 2 3 0.00023
Citrus clementina scaffold_3 1 CH_ccl_186 3 5 0.0000010092
Carya illinoinensis Chr07 1 CH_cil_310 3 16 0.0000129
Carica papaya supercontig_51 1 CH_cpa_7 5 8 0.0000000000000343094
Davidia involucrata GWHABJS00000004 1 CH_din_452 2 3 0.000450094
Durio zibethinus NW_019168004.1 1 CH_dzi_120 3 4 0.000000721738
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_530 2 2 0.000942317
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_531 2 2 0.000942317
Fragaria x ananassa Fvb6-3 1 CH_fan_152 3 3 0.000000186943
Fragaria x ananassa Fvb6-1 1 CH_fan_153 3 3 0.000000186943
Fragaria vesca Fvb6 1 CH_fve_117 3 3 0.0000000208231
Glycine max Gm03 1 CH_gma_106 4 4 0.0000000017432
Glycine max Gm19 1 CH_gma_357 3 6 0.0000873937
Glycine max Gm19 1 CH_gma_94 5 12 0.000000000522881
Helianthus annuus HanXRQChr04 1 CH_han_287 3 3 0.000000815342
Lupinus albus Lalb_Chr18 1 CH_lal_104 3 3 0.000000681733
Lotus japonicus chr1 1 CH_lja_157 3 3 0.000000644306
Lonicera japonica GWHAAZE00000004 1 CH_lonja_410 4 80 0.0000706644
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_202 3 3 0.000000332904
Malus domestica Chr04 1 CH_mdo_40 5 6 0.00000000000000521132
Manihot esculenta Chromosome08 1 CH_mes_185 3 3 0.000000313221
Manihot esculenta Chromosome09 1 CH_mes_92 4 4 0.0000000000478185
Medicago truncatula chr7 1 CH_mtr_184 4 6 0.00000000102974
Medicago truncatula chr1 1 CH_mtr_431 3 6 0.00000835259
Punica granatum NC_045128.1 1 CH_pgr_291 2 2 0.000225107
Prunus persica Pp06 1 CH_ppe_419 2 2 0.000223789
Pisum sativum chr3LG5 1 CH_psa_249 3 15 0.000103846
Populus trichocarpa Chr19 1 CH_ptr_100 4 5 0.000000000101377
Phaseolus vulgaris Chr04 1 CH_pvu_214 3 4 0.00000534308
Phaseolus vulgaris Chr06 1 CH_pvu_79 4 4 0.0000000003927
Quercus lobata 3 1 CH_qlo_386 3 3 0.0000000399842
Quercus lobata 9 1 CH_qlo_976 2 2 0.000516289
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_328 3 9 0.000000800825
Salix brachista GWHAAZH00000019 1 CH_sbr_52 4 4 0.0000000000262749
Simmondsia chinensis GWHAASQ00000016 1 CH_sci_265 2 2 0.000510856
Sequoiadendron giganteum chr7 1 CH_sgi_356 5 16 0.00000000157603
Sequoiadendron giganteum chr3 1 CH_sgi_45 11 33 1.80203e-26
Selaginella moellendorffii scaffold_26 1 CH_smo_150 2 2 0.000560224
Theobroma cacao Chromosome_5 1 CH_tca_132 3 4 0.0000000321834
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_171 3 6 0.00000601409
Tripterygium wilfordii NC_052235.1 1 CH_twi_315 2 2 0.00083626
Tripterygium wilfordii NC_052246.1 1 CH_twi_38 4 4 0.00000000000779829
Vigna mungo CM024077.1 1 CH_vmu_156 3 6 0.0000275351
Vigna mungo CM024075.1 1 CH_vmu_46 4 4 0.000000000400636
Vitis vinifera chr4 1 CH_vvi_138 3 3 0.0000000347148
Acer truncatum chr2 2 CH_acertr_564 2 2 0.00070497
Actinidia chinensis Lachesis_group22 2 CH_ach_94 2 2 0.0000543213
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_153 4 4 0.000000000246346
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 2 CH_arhy_288 3 3 0.00000109709
Camellia sinensis var. sinensis Chr1 2 CH_camsi_739 2 2 0.000275128
Cannabis sativa NC_044375.1 2 CH_cansat_235 2 2 0.0000656642
Corylus avellana 2 2 CH_cav_332 2 3 0.00023
Citrus clementina scaffold_3 2 CH_ccl_186 3 5 0.0000010092
Carya illinoinensis Chr07 2 CH_cil_310 3 16 0.0000129
Carica papaya supercontig_51 2 CH_cpa_7 5 8 0.0000000000000343094
Davidia involucrata GWHABJS00000004 2 CH_din_452 2 3 0.000450094
Durio zibethinus NW_019168004.1 2 CH_dzi_120 3 4 0.000000721738
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_530 2 2 0.000942317
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_531 2 2 0.000942317
Eucalyptus grandis Chr02 2 CH_egr_939 2 2 0.000877912
Fragaria x ananassa Fvb6-3 2 CH_fan_152 3 3 0.000000186943
Fragaria x ananassa Fvb6-1 2 CH_fan_153 3 3 0.000000186943
Fragaria vesca Fvb6 2 CH_fve_117 3 3 0.0000000208231
Glycine max Gm03 2 CH_gma_106 4 4 0.0000000017432
Glycine max Gm19 2 CH_gma_357 3 6 0.0000873937
Glycine max Gm19 2 CH_gma_94 5 12 0.000000000522881
Helianthus annuus HanXRQChr04 2 CH_han_287 3 3 0.000000815342
Lupinus albus Lalb_Chr18 2 CH_lal_104 3 3 0.000000681733
Lotus japonicus chr1 2 CH_lja_157 3 3 0.000000644306
Lonicera japonica GWHAAZE00000004 2 CH_lonja_410 4 80 0.0000706644
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_202 3 3 0.000000332904
Malus domestica Chr04 2 CH_mdo_40 5 6 0.00000000000000521132
Manihot esculenta Chromosome08 2 CH_mes_185 3 3 0.000000313221
Manihot esculenta Chromosome09 2 CH_mes_92 4 4 0.0000000000478185
Punica granatum NC_045128.1 2 CH_pgr_291 2 2 0.000225107
Prunus persica Pp06 2 CH_ppe_419 2 2 0.000223789
Pisum sativum chr3LG5 2 CH_psa_249 3 15 0.000103846
Populus trichocarpa Chr19 2 CH_ptr_100 4 5 0.000000000101377
Phaseolus vulgaris Chr04 2 CH_pvu_214 3 4 0.00000534308
Phaseolus vulgaris Chr06 2 CH_pvu_79 4 4 0.0000000003927
Quercus lobata 3 2 CH_qlo_386 3 3 0.0000000399842
Quercus lobata 9 2 CH_qlo_976 2 2 0.000516289
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_328 3 9 0.000000800825
Salix brachista GWHAAZH00000019 2 CH_sbr_52 4 4 0.0000000000262749
Simmondsia chinensis GWHAASQ00000016 2 CH_sci_265 2 2 0.000510856
Sequoiadendron giganteum chr7 2 CH_sgi_356 5 16 0.00000000157603
Sequoiadendron giganteum chr3 2 CH_sgi_45 11 33 1.80203e-26
Selaginella moellendorffii scaffold_26 2 CH_smo_150 2 2 0.000560224
Theobroma cacao Chromosome_5 2 CH_tca_132 3 4 0.0000000321834
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_171 3 6 0.00000601409
Tripterygium wilfordii NC_052235.1 2 CH_twi_315 2 2 0.00083626
Tripterygium wilfordii NC_052246.1 2 CH_twi_38 4 4 0.00000000000779829
Vigna mungo CM024077.1 2 CH_vmu_156 3 6 0.0000275351
Vigna mungo CM024075.1 2 CH_vmu_46 4 4 0.000000000400636
Vitis vinifera chr4 2 CH_vvi_138 3 3 0.0000000347148

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001